PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678410217

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

HD-ZIP

Protein Properties

Length: 166aa MW: 19721.4 Da PI: 5.4266

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678410217	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	56.6	4.4e-18	31	82	5	56
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++++eq + Le++F +++++ ++++e+ A++lgL rqV vWFqNrR + + 678410217 31 RRLSEEQANLLERYFLEDPTLETDRKERYAQELGLHPRQVAVWFQNRRVRCR 82 5789**********************************************98 PP
2	HD-ZIP_I/II	98.5	6.2e-32	30	120	3	93
HD-ZIP_I/II 3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 rrls+eq++lLE+ F e+ +Le++rK++ a+eLgl+prqvavWFqnrR R ++k+lE++++ L+ ++++ + e++rLe + Lre+l+e 678410217 30 NRRLSEEQANLLERYFLEDPTLETDRKERYAQELGLHPRQVAVWFQNRRVRCRNKKLEEEFANLRVRHETTVVEKCRLEMQILMLREQLRE 120 69************9999******************************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.8E-17	14	86	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.147	24	84	IPR001356	Homeobox domain
SMART	SM00389	1.6E-17	27	88	IPR001356	Homeobox domain
CDD	cd00086	7.21E-14	31	85	No hit	No description
Gene3D	G3DSA:1.10.10.60	3.0E-17	32	89	IPR009057	Homeodomain-like
Pfam	PF00046	5.8E-15	32	82	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	59	82	IPR017970	Homeobox, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 166 aa Download sequence Send to blast
MNSALLSFSL CEVFEYGLRE EQGRRSSCTN RRLSEEQANL LERYFLEDPT LETDRKERYA 60 QELGLHPRQV AVWFQNRRVR CRNKKLEEEF ANLRVRHETT VVEKCRLEMQ ILMLREQLRE 120 AENEIQKLSA CAPSPPPMEE LRLLQRGFEF DDHATPAVAW DSLYCL

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678410217

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269\|PubMed:16055682}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009783627.1	1e-36	PREDICTED: homeobox-leucine zipper protein ATHB-40-like
Swissprot	Q9ZU70	3e-33	ATB21_ARATH; Homeobox-leucine zipper protein ATHB-21
TrEMBL	A0A1U7WUN7	3e-35	A0A1U7WUN7_NICSY; homeobox-leucine zipper protein ATHB-40-like
TrEMBL	S8C296	1e-35	S8C296_9LAMI; Uncharacterized protein (Fragment)
STRING	XP_009783627.1	4e-36	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1289	24	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G18550.1	1e-35	homeobox protein 21

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] González-Grandío E, et al. Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254 [PMID:28028241]