PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678411205
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family LBD
Protein Properties Length: 248aa    MW: 26535.3 Da    PI: 8.6292
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678411205genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26088.96.6e-284106197
     DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                +C++C+vlr++C++ C++++ +     p++q++++ +++k++G++ +++l++a ++ + r+++++sl+yeA+ r+ +PvyG+vg++ ++++ql+q+++e+
  678411205   4 SCNGCRVLRKGCSDACTIRESLewirsPDAQANATVFLAKFYGRTGLVNLINAGKPPRlRQAIFRSLLYEACGRIVNPVYGSVGLLESGKWQLCQEAVEA 103
                6*****************************************************66666**************************************999 PP

     DUF260  95 all 97 
                +l 
  678411205 104 VLK 106
                876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089115.4723110IPR004883Lateral organ boundaries, LOB
PfamPF031951.6E-224103IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MRLSCNGCRV LRKGCSDACT IRESLEWIRS PDAQANATVF LAKFYGRTGL VNLINAGKPP  60
RLRQAIFRSL LYEACGRIVN PVYGSVGLLE SGKWQLCQEA VEAVLKGVPI EKIAASDAPA  120
LKGCDIRHVC KKDKKQFSGA MALNRVRPSS RFKRSGARQQ LESEEDRSPS HGSTLSHQSA  180
AAEITERESA CRSSQGTDVE SGGENDVVDI ELDLSLGLGP VKAAVKPKAI AACGGACEMG  240
LGLHPQPS
Cis-element ? help Back to Top
SourceLink
PlantRegMap678411205
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012840975.17e-88PREDICTED: LOB domain-containing protein 41-like
SwissprotQ9M8868e-72LBD41_ARATH; LOB domain-containing protein 41
TrEMBLA0A022R3672e-86A0A022R367_ERYGU; Uncharacterized protein
STRINGMigut.L00314.1.p3e-87(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8862494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.12e-72LOB domain-containing protein 41