PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678411305
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family HD-ZIP
Protein Properties Length: 228aa    MW: 26222.5 Da    PI: 6.7831
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678411305genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.94.6e-2052104456
                -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                ++++++eq++ Le+ F  ++++ +e++ +LA++lgL+ rqV vWFqNrRa++k
  678411305  52 KRKLSEEQVNMLERSFGCEHKLETERKDRLAAELGLDSRQVAVWFQNRRARWK 104
                45899***********************************************9 PP
2HD-ZIP_I/II115.92.3e-3751141292
  HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                  +kr+ls+eqv++LE+sF  e+kLe+erK +la eLgl+ rqvavWFqnrRAR+k k+lE++y++Lk+++d  + e++rLe+e  +L+e+l+
    678411305  51 RKRKLSEEQVNMLERSFGCEHKLETERKDRLAAELGLDSRQVAVWFQNRRARWKVKKLEEEYSKLKAEHDVAVVEKCRLESELLKLKEQLD 141
                  8***************************************************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.5246106IPR001356Homeobox domain
SMARTSM003892.9E-1749110IPR001356Homeobox domain
SuperFamilySSF466894.71E-1851114IPR009057Homeodomain-like
CDDcd000862.25E-1451107No hitNo description
PfamPF000462.3E-1752104IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.609.3E-2053113IPR009057Homeodomain-like
PRINTSPR000311.0E-57786IPR000047Helix-turn-helix motif
PROSITE patternPS00027081104IPR017970Homeobox, conserved site
PRINTSPR000311.0E-586102IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MNQQEDLDDA MFVSEYRSDG IYPQLPPEQG ASKQPQRRRR KKKSTDDGVM RKRKLSEEQV  60
NMLERSFGCE HKLETERKDR LAAELGLDSR QVAVWFQNRR ARWKVKKLEE EYSKLKAEHD  120
VAVVEKCRLE SELLKLKEQL DVAKMEIQRL SERSSINCNG NSNSPSSSSA FSMEELLFVG  180
MQDMESVYGG GYGQGLAWAP KACGGWVGPS LWSVSYAFHS WSREWDSD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13642RRRRKKK
23653RRRRKKKSTDDGVMRKRK
33953RKKKSTDDGVMRKRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00473DAPTransfer from AT4G36740Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap678411305
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011099589.25e-65homeobox-leucine zipper protein ATHB-40
SwissprotO232082e-56ATB40_ARATH; Homeobox-leucine zipper protein ATHB-40
TrEMBLA0A2G9G2611e-61A0A2G9G261_9LAMI; Transcription factor HEX
STRINGSolyc02g085630.2.16e-62(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12892480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36740.14e-40homeobox protein 40
Publications ? help Back to Top
  1. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]