PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678411797
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family WRKY
Protein Properties Length: 453aa    MW: 48911.3 Da    PI: 7.3934
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678411797genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.81.4e-30215271259
                --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                dDgynWrKYGqK+vk  e+prsYYrC++a+Cpv+kkve+s+ d+++ ei+Y+g+Hnh+
  678411797 215 DDGYNWRKYGQKNVKARECPRSYYRCSHADCPVRKKVETST-DGSISEIIYKGQHNHD 271
                8***************************************9.***************7 PP
2WRKY98.73.6e-31356414159
                ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                ldDgy+WrKYGqK+vkg+++prsYYrCt+agC+v+k+ver+++d++ v++tYeg+Hnh+
  678411797 356 LDDGYRWRKYGQKVVKGKTHPRSYYRCTYAGCNVRKHVERATSDTRDVTTTYEGKHNHD 414
                59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.809.0E-28211273IPR003657WRKY domain
SuperFamilySSF1182903.53E-24213273IPR003657WRKY domain
SMARTSM007742.9E-31214272IPR003657WRKY domain
PROSITE profilePS5081122.263215273IPR003657WRKY domain
PfamPF031063.2E-24215271IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.0E-33342416IPR003657WRKY domain
SuperFamilySSF1182905.36E-28348416IPR003657WRKY domain
PROSITE profilePS5081135.324351416IPR003657WRKY domain
SMARTSM007743.9E-34356415IPR003657WRKY domain
PfamPF031062.4E-24357414IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 453 aa     Download sequence    Send to blast
MAVDNSGTEG QGEAMDGGEE ARRPKPASIL VPPPAPVESF FGYEFGGLGF SPGPLTLLSS  60
FFSEATPRGV TPGETGGDKG ADGQSGGGGG GGYKRNRPTS LAVAPSADSL SHLLMIPSGM  120
TPTPSGLLPS PGLLSPLQSP FAISHQQALA FVTAQAALND SCTQMQIQQH PPSSPSYDAF  180
PSLPEAEAMK IESYDGIQPE MKAPAVKAEL GNPGDDGYNW RKYGQKNVKA RECPRSYYRC  240
SHADCPVRKK VETSTDGSIS EIIYKGQHNH DPPQSSKRGK DPAQSKSMPL VGQEAFDSHS  300
VADNKNESKE SVVVPDDEEG DIPDAKRRNV ELEKPAPRTS TEYKIVVQTR SEVDLLDDGY  360
RWRKYGQKVV KGKTHPRSYY RCTYAGCNVR KHVERATSDT RDVTTTYEGK HNHDIPTGKH  420
SSQADPHHVR PQNSGGTNQR PATLCRKQGQ IVI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-32215416877Probable WRKY transcription factor 4
2lex_A1e-32215416877Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Has a positive role in resistance to necrotrophic pathogens (e.g. Botrytis cinerea), but a negative effect on plant resistance to biotrophic pathogens (e.g. Pseudomonas syringae). {ECO:0000269|PubMed:18570649, ECO:0000269|PubMed:22219184}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678411797
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By biotic and abiotic stresses such as pathogen infection (e.g. Botrytis cinerea and Pseudomonas syringae), salicylic acid (SA), jasmonic acid (JA), ethylene (ACC), liquid infiltration or spraying, and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:18570649}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011098678.11e-139probable WRKY transcription factor 4
SwissprotQ9XI905e-96WRKY4_ARATH; Probable WRKY transcription factor 4
TrEMBLA0A2G9G6J91e-134A0A2G9G6J9_9LAMI; Uncharacterized protein
STRINGMigut.H00670.1.p1e-117(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43142344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13960.16e-90WRKY DNA-binding protein 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]