PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678411904
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family HD-ZIP
Protein Properties Length: 239aa    MW: 26484.6 Da    PI: 8.5206
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678411904genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.59.6e-1854107356
                --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                k++++  eq+++Le+ Fe  +++  e++ eLA+ lgL+ rq+ +WFqNrRa+ k
  678411904  54 KKRRLHVEQVRALEKSFELGSKLEPERKMELARALGLQPRQIAIWFQNRRARSK 107
                4557899*********************************************99 PP
2HD-ZIP_I/II128.33.3e-4153143191
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                  ekkrrl  eqv++LE+sFe  +kLeperK+elar+Lglqprq+a+WFqnrRAR ktkqlEkdy++Lkr++da++++ne+L++++++L++++
    678411904  53 EKKRRLHVEQVRALEKSFELGSKLEPERKMELARALGLQPRQIAIWFQNRRARSKTKQLEKDYDVLKRQFDAIRADNESLKSQNKKLESQI 143
                  69**************************************************************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466899.41E-1934111IPR009057Homeodomain-like
PROSITE profilePS5007116.5249109IPR001356Homeobox domain
SMARTSM003894.0E-1852113IPR001356Homeobox domain
PfamPF000466.7E-1554107IPR001356Homeobox domain
CDDcd000861.40E-1654110No hitNo description
Gene3DG3DSA:1.10.10.603.0E-1856116IPR009057Homeodomain-like
PRINTSPR000312.9E-68089IPR000047Helix-turn-helix motif
PROSITE patternPS00027084107IPR017970Homeobox, conserved site
PRINTSPR000312.9E-689105IPR000047Helix-turn-helix motif
PfamPF021832.6E-14109149IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MFQSRENASR LPSSSSAVTD FHGFLMGRSV SFSGADMPPD DEMSDDGSQF HGEKKRRLHV  60
EQVRALEKSF ELGSKLEPER KMELARALGL QPRQIAIWFQ NRRARSKTKQ LEKDYDVLKR  120
QFDAIRADNE SLKSQNKKLE SQILALRKRE SSGGTINLNR EKEHSWSNAT DNTGAATAAA  180
VLFPPSMALG GGLTELLHSS AGGNHPPPST AGSAGLCNLL GRIEENPDLW PWTDPQSFH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1101109RRARSKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678411904
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011098601.18e-85homeobox-leucine zipper protein HOX21
SwissprotQ8S7W95e-66HOX21_ORYSJ; Homeobox-leucine zipper protein HOX21
TrEMBLA0A4D9BTZ81e-82A0A4D9BTZ8_SALSN; Homeobox-leucine zipper protein
STRINGMigut.H00906.1.p1e-74(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8482498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26960.12e-64homeobox protein 23