PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678413169

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

NF-YA

Protein Properties

Length: 307aa MW: 34544.9 Da PI: 10.3567

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678413169	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	53.8	6.5e-17	148	182	1	36
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrk 36 d p+YVNaKQy++Il+RRq+Rakle+++kl k+rk 678413169 148 DGPIYVNAKQYHGILRRRQTRAKLEAQNKL-VKARK 182 57****************************.66666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	1.8E-8	146	202	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	17.588	147	182	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	1.3E-12	150	182	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	152	172	IPR018362	CCAAT-binding factor, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 307 aa Download sequence Send to blast
MTVHHTKSAF ELKRCNRCFS KYRRQIAKVF LAEDPVYRKL KYSSFKQPKL PNMQKKTSHD 60 HCGSSDSAPD ERYGKDGQDM KGAFFLGNPE IFVNSSSAEA NQPMFQHSYS DPHFNGVLAS 120 YGAQNVIQPH MMSGAFGRVP LPPGLPEDGP IYVNAKQYHG ILRRRQTRAK LEAQNKLVKA 180 RKTPTLCAAL PPRVPASACP QQRNQTAAVK EELKVEAMAP FTMGTGITPP RLSVEKQSFL 240 RCRRGWATHP WLCRLIIQVH GCVRMLLCEA EKRLLGLPQG ADPLNRKMDE QQQHPALVFS 300 PVTRLTP

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678413169

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5009	23	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72830.2	2e-23	nuclear factor Y, subunit A3