PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678413623
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family GATA
Protein Properties Length: 83aa    MW: 9442.83 Da    PI: 10.1207
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678413623genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.22e-173766130
       GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyy 30
               C++Cgt +TplWR+gpdg  tLCnaCGl++
  678413623 37 CRHCGTVDTPLWRKGPDGRQTLCNACGLKH 66
               ****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577167.13E-142971No hitNo description
SMARTSM004012.6E-103183IPR000679Zinc finger, GATA-type
PROSITE profilePS5011413.4553166IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.107.3E-163568IPR013088Zinc finger, NHR/GATA-type
CDDcd002024.21E-123682No hitNo description
PROSITE patternPS0034403762IPR000679Zinc finger, GATA-type
PfamPF003204.1E-153766IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 83 aa     Download sequence    Send to blast
MSTYAGAYNF ITAAARHNYF VSMSPMMRRN PDDMRICRHC GTVDTPLWRK GPDGRQTLCN  60
ACGLKHLRSA KKDTAESAYK RKD
Cis-element ? help Back to Top
SourceLink
PlantRegMap678413623
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011080229.11e-17GATA transcription factor 15-like
SwissprotQ54TM65e-14GTAI_DICDI; GATA zinc finger domain-containing protein 9
TrEMBLS8CSV22e-17S8CSV2_9LAMI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1667355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28340.12e-11GATA transcription factor 13