PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678413640
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family ERF
Protein Properties Length: 209aa    MW: 22958.8 Da    PI: 10.1053
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678413640genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.22.3e-193180255
        AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
               +++GVr ++ +gr++AeIrdp++   + r++lg+f++aeeAaka++ a+++++g
  678413640 31 HFRGVRKRP-WGRFAAEIRDPTK---KSRVWLGTFDSAEEAAKAYDDAARQFRG 80
               69*******.**********864...6************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.31E-213188IPR016177DNA-binding domain
CDDcd000184.58E-313188No hitNo description
PROSITE profilePS5103223.3413188IPR001471AP2/ERF domain
PfamPF008475.4E-133180IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-313188IPR001471AP2/ERF domain
SMARTSM003807.9E-383194IPR001471AP2/ERF domain
PRINTSPR003673.1E-103243IPR001471AP2/ERF domain
PRINTSPR003673.1E-105470IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016020Cellular Componentmembrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MITRQAHGLR SNPMASRPKL AAAVSGGGGA HFRGVRKRPW GRFAAEIRDP TKKSRVWLGT  60
FDSAEEAAKA YDDAARQFRG PKAKTNFPPP PSGFEMDRHD CFVDNRSPSN SSEVETAAPD  120
SPLLELTLGS QRQRFPQINS CSETPPPKTP LLHLRAESRQ EIVDMMNRMR CRRLAEAAVE  180
SESDSSSAVA DRPKSPLNLD LNLSPPANP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A8e-222988363ATERF1
3gcc_A8e-222988363ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00623PBMTransfer from PK19363.1Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap678413640
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020553968.18e-64ethylene-responsive transcription factor 4-like
TrEMBLA0A2Z7B9141e-46A0A2Z7B914_9LAMI; Ethylene-responsive transcription factor 4-like
STRINGAES896932e-39(Medicago truncatula)
STRINGXP_009618542.12e-39(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.14e-26erf domain protein 9