PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678415182
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family C2H2
Protein Properties Length: 178aa    MW: 20054.9 Da    PI: 8.6488
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678415182genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.97.7e-054466123
               EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
               y+C+ C + F++   L  H+++H
  678415182 44 YTCSFCRREFRSAQALGGHMNVH 66
               9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.27E-64170No hitNo description
PROSITE profilePS5015711.2194471IPR007087Zinc finger, C2H2
PfamPF139129.6E-64467IPR007087Zinc finger, C2H2
SMARTSM003550.00614466IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002804666IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MEKARIVRGR SGEVGGSLDL FKLKNCWSGP FQEGGMFSWP PRSYTCSFCR REFRSAQALG  60
GHMNVHRRDR ARLRLSPAKD DGELSVLHPK IETLNSNPSF LNSSAFKLNH MSEEGKGVVV  120
EKHHVGELGD GLVKMKGAKG LFLLKKVDLW EDEKDCEGVD QNQELDLELR LGFSSYMK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A4e-143966229superman protein
2l1o_A4e-143966229Transcriptional regulator SUPERMAN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap678415182
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027164902.11e-28transcriptional regulator SUPERMAN-like
TrEMBLS8DR031e-30S8DR03_9LAMI; Uncharacterized protein (Fragment)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21102453
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42410.11e-23zinc finger protein 11