PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678415418

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

G2-like

Protein Properties

Length: 317aa MW: 34532.1 Da PI: 7.075

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678415418	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	103.8	1e-32	45	99	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt +LHerFv+av+qLGG+ kAtPk+i+++m+vkgLtl h+kSHLQkYRl 678415418 45 KPRLRWTADLHERFVDAVTQLGGASKATPKAIMRTMGVKGLTLFHLKSHLQKYRL 99 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.7E-31	42	100	IPR009057	Homeodomain-like
PROSITE profile	PS51294	9.954	42	102	IPR017930	Myb domain
SuperFamily	SSF46689	3.4E-16	45	101	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.3E-23	45	100	IPR006447	Myb domain, plants
Pfam	PF00249	1.4E-7	47	98	IPR001005	SANT/Myb domain
Pfam	PF14379	1.8E-15	140	185	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 317 aa Download sequence Send to blast
MFPRMIQSRD AILSQEAAIQ VSNGSGFGQR VSSDPCMVQL TSDPKPRLRW TADLHERFVD 60 AVTQLGGASK ATPKAIMRTM GVKGLTLFHL KSHLQKYRLG KQSGNELGEG AKDGTFHLDS 120 PHSSSSPQNL PTSDMNDGYE VKEALRAQME VQSKLHLQVE AEKHLQVRQD AERRYLGMLE 180 QACKMLANQI IGEAAVNNDV AGSSDKGTKN PVNGSLIPVP SYPSHSAEEL RGPGEIPPNL 240 HLSHADCSTK SCLTTSHESH LALSQGLPVN DIKRPLLHVD PTNALFLWGE SDVYTPDLHV 300 MQVPSHGIMG NGVLKTL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-18	45	101	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-18	45	101	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	1e-18	45	101	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-18	45	101	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-18	45	101	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-18	45	101	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-18	45	101	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-18	45	101	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-18	45	101	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-18	45	101	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-18	45	101	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-18	45	101	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator (PubMed:26586833). Acts redundantly with PHR1 as a key component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). {ECO:0000269\|PubMed:26586833}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678415418

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269\|PubMed:26586833}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020554068.1	1e-148	uncharacterized protein LOC105175200
Swissprot	Q94A57	2e-59	PHL2_ARATH; Protein PHR1-LIKE 2
TrEMBL	A0A2G9GE84	1e-151	A0A2G9GE84_9LAMI; Uncharacterized protein
STRING	Migut.M01478.1.p	1e-124	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA9764	20	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24120.1	1e-61	G2-like family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]