PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678416553
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family NF-YC
Protein Properties Length: 142aa    MW: 15963.6 Da    PI: 10.1333
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678416553genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC48.32.2e-15201031698
      NF-YC  16 fknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd.ifdflvdivpr 98 
                  +  +Pl r+kki+k d+d+++is ea  l+s + elf+  l+  s   + e+k+rt+k  d+  av+r     dfl+d  p 
  678416553  20 SIKVLIPLHRVKKIVKLDKDINRISNEALFLISSSTELFLQFLAEESARVTMEKKKRTVKVEDLRVAVKRHRpAADFLLDCLPS 103
                556679**************************************************************9976378*****9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471138.53E-188104IPR009072Histone-fold
PfamPF008082.3E-182587IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.104.3E-2026102IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 142 aa     Download sequence    Send to blast
MEPQVMAEDG GEAMGAVEES IKVLIPLHRV KKIVKLDKDI NRISNEALFL ISSSTELFLQ  60
FLAEESARVT MEKKKRTVKV EDLRVAVKRH RPAADFLLDC LPSPPQQSDK IPAKDRTKSK  120
EKKSASVPFA SRSIDAFFLK IN
Cis-element ? help Back to Top
SourceLink
PlantRegMap678416553
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012851147.13e-47PREDICTED: nuclear transcription factor Y subunit gamma
TrEMBLA0A2G9GVN93e-53A0A2G9GVN9_9LAMI; Uncharacterized protein
STRINGMigut.K00728.1.p1e-46(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA114352425
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43250.12e-39nuclear factor Y, subunit C13