PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678416684
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family bHLH
Protein Properties Length: 94aa    MW: 10401.9 Da    PI: 10.7627
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678416684genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.37.3e-0529632155
               HHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH 21 eeLrellPkaskapskKlsKaeiLekAveYIksLq 55
               ++L +llP + ++++ K   + +Le+++eY+++Lq
  678416684 29 SRLNQLLPRSRRPSASKGAASKVLEETCEYVRNLQ 63
               6899*****7688888888899************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.106.1E-52474IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.71E-52982IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 94 aa     Download sequence    Send to blast
MSTGRRRPSS RQSTGNVRIS DDEILLLVSR LNQLLPRSRR PSASKGAASK VLEETCEYVR  60
NLQREVGDLS ERLSLLLSTV DPDSPQAAVI RALI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1411RRRPSSRQ
Functional Description ? help Back to Top
Source Description
UniProtAtypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. May have a regulatory role in various aspects of gibberellin-dependent growth and development. {ECO:0000269|PubMed:16527868}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678416684
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004233358.12e-30transcription factor PRE6 isoform X2
RefseqXP_006357115.12e-30PREDICTED: transcription factor PRE6-like
RefseqXP_015065156.12e-30transcription factor PRE6
RefseqXP_016559055.12e-30PREDICTED: transcription factor PRE6-like
SwissprotQ9LJX11e-25PRE5_ARATH; Transcription factor PRE5
TrEMBLA0A2G3D3F31e-29A0A2G3D3F3_CAPCH; Uncharacterized protein
STRINGSolyc02g067380.2.17e-30(Solanum lycopersicum)
STRINGPGSC0003DMT4000177486e-30(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA35324161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28857.16e-28bHLH family protein