PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678417204
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family HD-ZIP
Protein Properties Length: 202aa    MW: 23167.1 Da    PI: 5.0302
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678417204genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.21.7e-191265356
               --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
               k+++++++q+++Lee+Fe ++++ a ++++LA++lgL  rq+ +WFqNrRa+ k
  678417204 12 KKRRLKPDQVRVLEEVFEVENKLEACRKQQLAEELGLHPRQIAIWFQNRRARCK 65
               56689***********************************************98 PP
2HD-ZIP_I/II113.51.3e-3611102192
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                  ekkrrl+ +qv++LEe Fe e+kLe  rK++la+eLgl+prq+a+WFqnrRAR k+k lEk++++Lk++yd+lk++++++ +++++Lr+++ 
    678417204  11 EKKRRLKPDQVRVLEEVFEVENKLEACRKQQLAEELGLHPRQIAIWFQNRRARCKSKLLEKEFDSLKAKYDKLKSDHDAIFAKNQQLRNQVL 102
                  69**************************************************************************************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.39767IPR001356Homeobox domain
SMARTSM003895.6E-171071IPR001356Homeobox domain
SuperFamilySSF466895.99E-181076IPR009057Homeodomain-like
CDDcd000868.71E-141267No hitNo description
PfamPF000469.8E-171265IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.6E-181265IPR009057Homeodomain-like
PRINTSPR000313.7E-63847IPR000047Helix-turn-helix motif
PROSITE patternPS0002704265IPR017970Homeobox, conserved site
PRINTSPR000313.7E-64763IPR000047Helix-turn-helix motif
PfamPF021832.1E-1268108IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MDGESDDGRP EKKRRLKPDQ VRVLEEVFEV ENKLEACRKQ QLAEELGLHP RQIAIWFQNR  60
RARCKSKLLE KEFDSLKAKY DKLKSDHDAI FAKNQQLRNQ VLQLTQKLGN PIVAEDELTP  120
DPQTKTSSPA AAASSVRSDI IDSESSSPLE SFKPDFSDES MSFLQPLLSF PKVEPENCED  180
LQPNSCNLGF PVQYQGTWLW RF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11116KKRRLK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678417204
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011071034.11e-58homeobox-leucine zipper protein HAT5-like
SwissprotA2X9802e-35HOX16_ORYSI; Homeobox-leucine zipper protein HOX16
SwissprotQ6YWR42e-35HOX16_ORYSJ; Homeobox-leucine zipper protein HOX16
TrEMBLA0A2G9HHP08e-62A0A2G9HHP0_9LAMI; Transcription factor PHOX2/ARIX, contains HOX domain
STRINGMigut.E00117.1.p2e-53(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8252495
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.12e-35homeobox 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]