PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678417860
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family MYB
Protein Properties Length: 242aa    MW: 28127.6 Da    PI: 6.9746
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678417860genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.72e-161467148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT......TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg......kgRtlkqcksrwqkyl 48
                     rg+W+ eEde+l++++k++G g W++ ++  g      + R++k+c++rw +yl
        678417860 14 RGKWSVEEDERLINYIKEHGEGGWRLLPKNAGiirfigLLRCGKSCRLRWINYL 67
                     89**************************************************97 PP
2Myb_DNA-binding59.48.1e-1973118148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T++E+el+++++k lG++ W++Ia++++  Rt++++k++w+++l
        678417860  73 RGNFTQDEEELIIELHKILGTK-WSLIAKHLP-WRTDNDIKNYWNSHL 118
                      89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.7E-22570IPR009057Homeodomain-like
PROSITE profilePS5129414.559967IPR017930Myb domain
SuperFamilySSF466899.98E-2811114IPR009057Homeodomain-like
SMARTSM007171.5E-111369IPR001005SANT/Myb domain
PfamPF002491.2E-141467IPR001005SANT/Myb domain
CDDcd001671.73E-81667No hitNo description
PROSITE profilePS5129426.03968122IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.1E-2571122IPR009057Homeodomain-like
SMARTSM007172.0E-1772120IPR001005SANT/Myb domain
PfamPF002493.5E-1773118IPR001005SANT/Myb domain
CDDcd001673.52E-1175118No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0051555Biological Processflavonol biosynthetic process
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MGRKPCCEKT GLKRGKWSVE EDERLINYIK EHGEGGWRLL PKNAGIIRFI GLLRCGKSCR  60
LRWINYLRSD VKRGNFTQDE EELIIELHKI LGTKWSLIAK HLPWRTDNDI KNYWNSHLSR  120
KVYRFRPNSS SISKSSFHVS DMKQEMQFGN ATTAATNNTD SFACADCCWS VEQQFDQDTL  180
FMQLEQNGEN NSTRNGNFSA WEPEDFTQFE CYLDVGNQQL GATTGYDQEL WSNQLAMVCN  240
WP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-26121225108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor postulated to regulate the biosynthetic pathway of a flavonoid-derived pigment in certain floral tissues.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00598PBMTransfer from AT5G49330Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap678417860
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011071652.14e-65transcription factor MYB14
SwissprotP278983e-61MYBP_MAIZE; Myb-related protein P
TrEMBLA0A0S2SZZ74e-63A0A0S2SZZ7_9LAMI; Light areas 1
TrEMBLA0A0S2T0F23e-63A0A0S2T0F2_ERYLE; Light areas 1
STRINGMigut.N00057.1.p7e-64(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49330.18e-56myb domain protein 111
Publications ? help Back to Top
  1. Robbins ML,Sekhon RS,Meeley R,Chopra S
    A Mutator transposon insertion is associated with ectopic expression of a tandemly repeated multicopy Myb gene pericarp color1 of maize.
    Genetics, 2008. 178(4): p. 1859-74
    [PMID:18430921]
  2. Sidorenko L,Chandler V
    RNA-dependent RNA polymerase is required for enhancer-mediated transcriptional silencing associated with paramutation at the maize p1 gene.
    Genetics, 2008. 180(4): p. 1983-93
    [PMID:18845841]
  3. Robbins ML,Wang P,Sekhon RS,Chopra S
    Gene structure induced epigenetic modifications of pericarp color1 alleles of maize result in tissue-specific mosaicism.
    PLoS ONE, 2009. 4(12): p. e8231
    [PMID:20011605]
  4. Rhee Y,Sekhon RS,Chopra S,Kaeppler S
    Tissue culture-induced novel epialleles of a Myb transcription factor encoded by pericarp color1 in maize.
    Genetics, 2010. 186(3): p. 843-55
    [PMID:20823340]
  5. Morohashi K, et al.
    A genome-wide regulatory framework identifies maize pericarp color1 controlled genes.
    Plant Cell, 2012. 24(7): p. 2745-64
    [PMID:22822204]