PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678418073
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family GATA
Protein Properties Length: 132aa    MW: 14167.1 Da    PI: 9.7985
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678418073genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA603.1e-193064135
       GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
               C+ Cgt+kTplWR gp+g+k+LCnaCG++ rkk++
  678418073 30 CADCGTSKTPLWRGGPSGPKSLCNACGIRSRKKRR 64
               ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004015.8E-162476IPR000679Zinc finger, GATA-type
SuperFamilySSF577167.13E-132564No hitNo description
Gene3DG3DSA:3.30.50.105.6E-162964IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.77E-112964No hitNo description
PROSITE patternPS0034403055IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.2813060IPR000679Zinc finger, GATA-type
PfamPF003204.5E-173064IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 132 aa     Download sequence    Send to blast
MDLSDKGSEC EDTSGGSVTP ESDSSIIKTC ADCGTSKTPL WRGGPSGPKS LCNACGIRSR  60
KKRRALMGVT KEVKKGRIWM AKSNSSSGDG FCGQLQRPRS NTKRRRKFGE EEQAAFLLMA  120
LSCGSVYASA CF
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00554DAPTransfer from AT5G49300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap678418073
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011100810.12e-50GATA transcription factor 15-like
SwissprotQ9FJ103e-32GAT16_ARATH; GATA transcription factor 16
TrEMBLA0A4D9A7J81e-50A0A4D9A7J8_SALSN; Uncharacterized protein
STRINGMigut.G00106.1.p1e-46(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19992362
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49300.11e-34GATA transcription factor 16
Publications ? help Back to Top
  1. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]
  2. Ranftl QL,Bastakis E,Klermund C,Schwechheimer C
    LLM-Domain Containing B-GATA Factors Control Different Aspects of Cytokinin-Regulated Development in Arabidopsis thaliana.
    Plant Physiol., 2016. 170(4): p. 2295-311
    [PMID:26829982]