PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678418908

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

C3H

Protein Properties

Length: 779aa MW: 84782.2 Da PI: 6.4175

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678418908	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.2	4.5e-06	363	383	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ GtC++Gd C +aHg 678418908 363 PCPGFRK-GTCRRGDMCEYAHG 383 7999999.*************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.25.40.20	5.3E-17	107	247	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	1.24E-15	109	244	IPR020683	Ankyrin repeat-containing domain
Pfam	PF12796	9.0E-10	146	220	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	11.745	151	244	IPR020683	Ankyrin repeat-containing domain
SMART	SM00248	1.3	151	181	IPR002110	Ankyrin repeat
CDD	cd00204	4.70E-12	153	240	No hit	No description
SMART	SM00248	0.02	186	218	IPR002110	Ankyrin repeat
PROSITE profile	PS50088	9.431	186	221	IPR002110	Ankyrin repeat
SMART	SM00356	2.0E-4	358	384	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	12.389	363	385	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	2.7E-4	391	421	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	56	393	416	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0005737	Cellular Component	cytoplasm
GO:0005515	Molecular Function	protein binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 779 aa Download sequence Send to blast
MGFRNRSSRL LCDQDTFTRP VRKKETAGTT SFDCCAFRLQ GFACGSWFRD KNGGGRRISY 60 REFDLTGVSG GGSEKSKVSS SVGEVALDLN MVRDLNDISG DMKDSLFSLL EMAANDDVEA 120 LKSSLESDMS SINCPGLWYV RNKETKKIME EERTVLMLAA SYGSIGVLKF LVTLPELDLN 180 KACGRDKWTA LHCAASGASI NAFDVVKLLL SVGCDPCIRD ANGRLPADVI VAQPNLPVAR 240 AALEDLLMKS FSDSSVDEGK LDVSVSINGQ GALPSEFVSS PVAPKAGGAS VNSLSEKKQY 300 PVDPSFPDIR DSVYSSDEFR MYVFKVRPCS RAYSHDWTEC PFAHPGENAR RRDPRKYHYS 360 CVPCPGFRKG TCRRGDMCEY AHGVFECWLH PAQYRTRLCK DGISCARQVC FFAHTQEELR 420 PLYVSTGSGV PSPRSTASAS SYMDMAAALN LLPGSPTSQS LMSPVFNQPL SPSANGMSHS 480 AVPWPKNNVP NLFLPGSNMQ SSRLRSALNA RDIPPEDLNV LADYDAQHPA FSDMERFSQP 540 HPSSALSFGH SMSTLTPSNL EDLFSSEVTS SPKYSDQAAA FGVLSPRHKS AVLNPFHPQQ 600 SILPPINTPR GFGPRTLLQA SFGVSSPRMS PRSTEPSSPV GNHLTSLAQR EGMQQQARSL 660 SSRDIGANPP SMMESPNAAW SSYGSQNGKT DWPAGAGLHC HLKRSSSFEL ETDEEEPDVS 720 WVQSLVKETS PEMTDKTAAR ISSAAPSGEC PDPNSHVDSI DHSVLGAWLD QMQLDQLTA

Sequence ? help Back to Top

Protein Sequence Length: 779 aa Download sequence Send to blast

MGFRNRSSRL LCDQDTFTRP VRKKETAGTT SFDCCAFRLQ GFACGSWFRD KNGGGRRISY  60
REFDLTGVSG GGSEKSKVSS SVGEVALDLN MVRDLNDISG DMKDSLFSLL EMAANDDVEA  120
LKSSLESDMS SINCPGLWYV RNKETKKIME EERTVLMLAA SYGSIGVLKF LVTLPELDLN  180
KACGRDKWTA LHCAASGASI NAFDVVKLLL SVGCDPCIRD ANGRLPADVI VAQPNLPVAR  240
AALEDLLMKS FSDSSVDEGK LDVSVSINGQ GALPSEFVSS PVAPKAGGAS VNSLSEKKQY  300
PVDPSFPDIR DSVYSSDEFR MYVFKVRPCS RAYSHDWTEC PFAHPGENAR RRDPRKYHYS  360
CVPCPGFRKG TCRRGDMCEY AHGVFECWLH PAQYRTRLCK DGISCARQVC FFAHTQEELR  420
PLYVSTGSGV PSPRSTASAS SYMDMAAALN LLPGSPTSQS LMSPVFNQPL SPSANGMSHS  480
AVPWPKNNVP NLFLPGSNMQ SSRLRSALNA RDIPPEDLNV LADYDAQHPA FSDMERFSQP  540
HPSSALSFGH SMSTLTPSNL EDLFSSEVTS SPKYSDQAAA FGVLSPRHKS AVLNPFHPQQ  600
SILPPINTPR GFGPRTLLQA SFGVSSPRMS PRSTEPSSPV GNHLTSLAQR EGMQQQARSL  660
SSRDIGANPP SMMESPNAAW SSYGSQNGKT DWPAGAGLHC HLKRSSSFEL ETDEEEPDVS  720
WVQSLVKETS PEMTDKTAAR ISSAAPSGEC PDPNSHVDSI DHSVLGAWLD QMQLDQLTA

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678418908

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011087691.1	0.0	zinc finger CCCH domain-containing protein 30-like
Swissprot	P93755	0.0	C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBL	A0A2G9IBP4	0.0	A0A2G9IBP4_9LAMI; CCCH-type Zn-finger protein
STRING	XP_009799603.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA883	24	88

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	0.0	CCCH-type zinc finger protein with ARM repeat domain

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] He L, et al. Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene. Plant Physiol., 2016. 171(3): p. 1675-85 [PMID:27208260]