PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678418927
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family B3
Protein Properties Length: 131aa    MW: 14841.4 Da    PI: 10.22
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678418927genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B360.13.8e-1921108398
                EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
         B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                k++     ++s+rl +p ++a++++   + s +++l+d  g++W+v +  ++++++++l +GW +F +++ +k g+f+vF + g  +f++ vk+f 
  678418927  21 KIF--IPEFASHRLLIPPSYAKRFKR--TFSEKVILKDAYGKVWQVSV--ERTPKGIFLCDGWPKFIDDHSIKIGEFLVFAYAG--SFTFSVKIFG 108
                555..568899**********99974..48889***************..*******************************977..7888999985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086313.8617110IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.5E-2219112IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.5E-1319110IPR003340B3 DNA binding domain
CDDcd100171.45E-1419107No hitNo description
SuperFamilySSF1019362.35E-2319112IPR015300DNA-binding pseudobarrel domain
PfamPF023623.6E-1721107IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 131 aa     Download sequence    Send to blast
MAKKKGIRRR TAVDSAAELF KIFIPEFASH RLLIPPSYAK RFKRTFSEKV ILKDAYGKVW  60
QVSVERTPKG IFLCDGWPKF IDDHSIKIGE FLVFAYAGSF TFSVKIFGVD GCKRMDFDHA  120
GEAAGKVIKC D
Cis-element ? help Back to Top
SourceLink
PlantRegMap678418927
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011086144.15e-32putative B3 domain-containing protein At5g66980
TrEMBLA0A4D8XRI53e-35A0A4D8XRI5_SALSN; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37792244
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.11e-22B3 family protein