PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678419089
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family MYB
Protein Properties Length: 205aa    MW: 22959.9 Da    PI: 7.7966
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678419089genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding491.4e-151462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W++eEd +l+d ++++G++ +W + +++ g++R++k+c++rw++yl
        678419089 14 RGPWSPEEDAILKDFIEKFGTDgSWIALPQKAGLKRCGKSCRLRWLNYL 62
                     89*********************************************97 PP
2Myb_DNA-binding38.72.3e-1269111246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g ++ eEd ++  + +  G++ W+  a +++ gRt++++k++w++
        678419089  69 GYFSDEEDRIICSLYAAIGSR-WSIMATHLP-GRTDNDIKNHWNT 111
                      679******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.293962IPR017930Myb domain
SuperFamilySSF466891.84E-2612109IPR009057Homeodomain-like
SMARTSM007171.0E-111364IPR001005SANT/Myb domain
PfamPF002491.3E-141462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.2E-231569IPR009057Homeodomain-like
CDDcd001673.62E-91662No hitNo description
PROSITE profilePS5129420.95863117IPR017930Myb domain
SMARTSM007171.5E-1167115IPR001005SANT/Myb domain
PfamPF002499.2E-1169111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.8E-2370117IPR009057Homeodomain-like
CDDcd001671.78E-871113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MGRAPCCDKA KVKRGPWSPE EDAILKDFIE KFGTDGSWIA LPQKAGLKRC GKSCRLRWLN  60
YLRPNLKHGY FSDEEDRIIC SLYAAIGSRW SIMATHLPGR TDNDIKNHWN TKLKKKLIGA  120
MTTIPSAAVL YGDASASAYS FYDDLTNSQG MVPDESLTLN FPMSSTQDFS GCAYQNPYHD  180
GLSDLQAYQN FSNIDPYFYG GERAA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-26141177108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factors that activates genes required for endodermal differentiation but represses genes involved in proliferative divisions, thus regulating the transition from proliferation to differentiation in root endodermis (PubMed:26371322). Required for Casparian strip formation by positively regulating the expression of the Casparian strip genes CASP1, PER64 and ESB1 and other endodermis-specific genes, thus triggering correct localized lignin biosynthesis in root endodermis and subsequently regulating global ion homeostasis (PubMed:26124109, PubMed:26371322). {ECO:0000269|PubMed:26124109, ECO:0000269|PubMed:26371322}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678419089
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Directly up-regulated by SCARECROW (SCR), as part of the differentiation program controlled by SHORT-ROOT (SHR). {ECO:0000269|PubMed:24517883, ECO:0000269|PubMed:26371322}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021278944.14e-77LOW QUALITY PROTEIN: transcription factor RAX2-like
SwissprotQ9FKL24e-71MYB36_ARATH; Transcription factor MYB36
TrEMBLA0A061GYH81e-75A0A061GYH8_THECC; Myb domain protein 36, putative
STRINGEOY342872e-76(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.12e-73myb domain protein 36
Publications ? help Back to Top
  1. Fernández-Marcos M, et al.
    Control of Arabidopsis lateral root primordium boundaries by MYB36.
    New Phytol., 2017. 213(1): p. 105-112
    [PMID:27891649]