PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678419519
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family WRKY
Protein Properties Length: 257aa    MW: 28884.2 Da    PI: 6.3109
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678419519genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY75.18.5e-24110169258
                --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 
                +D+y+WrKYGqK+++++++pr+YYrC+ +   +Cp+kk v++++++p v++i+Y g+H +
  678419519 110 QDEYQWRKYGQKNIQDAKHPRAYYRCSKSkshNCPAKKFVQQTEDNPVVLTIKYLGDHVC 169
                7**************************98888**************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.2E-23100170IPR003657WRKY domain
PROSITE profilePS5081119.428104167IPR003657WRKY domain
SuperFamilySSF1182901.57E-21105169IPR003657WRKY domain
SMARTSM007747.8E-27109171IPR003657WRKY domain
PfamPF031067.7E-22110169IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MEGGELESVV QVLSEGRERV DQLERKLRGA NKSGEDGCFA LLAAVSSSID GALEKIRWMG  60
AAGNDATSHV SIPNDLGSVD SHQVQQVSDK KRKPIRTWTV HLTGTEALNQ DEYQWRKYGQ  120
KNIQDAKHPR AYYRCSKSKS HNCPAKKFVQ QTEDNPVVLT IKYLGDHVCV QQKAKKPKQN  180
PTFSEERQDE LQLDPLRELP YHYPTTATES VPFETQILED VAGESYSTLW NANPCLESGF  240
TGSYNSPDHT MLFILNT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A6e-141151691468OsWRKY45
Cis-element ? help Back to Top
SourceLink
PlantRegMap678419519
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA55532237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23810.11e-19WRKY family protein