PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678419622
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family AP2
Protein Properties Length: 311aa    MW: 35231 Da    PI: 7.6291
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678419622genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.41.3e-113693156
        AP2  1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkklege 56
               s y+GV++++++gr++A+++d  ++n  ++k+ + g ++ ++ Aa a++ a++k++g+
  678419622 36 SVYRGVTRHRWTGRYEAHLWDkDCWNEsQNKKGRQGAYDDEKAAAHAYDLAALKYWGH 93
               78*******************99998898888888*****99*************997 PP
2AP2513.5e-16135186155
        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                s+y+GV +++ +grW+A+I  +     +k+ +lg++ t eeAa a++ a+ +++g
  678419622 135 SKYRGVARHHHNGRWEARIGRVLG---NKYLYLGTYATQEEAAIAYDVAAIEYRG 186
                89****99**********988422...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.9E-83693IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-1536102IPR016177DNA-binding domain
SMARTSM003801.0E-1837106IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.5E-1237101IPR001471AP2/ERF domain
PROSITE profilePS5103217.93837100IPR001471AP2/ERF domain
PRINTSPR003672.9E-63849IPR001471AP2/ERF domain
SuperFamilySSF541716.28E-18135196IPR016177DNA-binding domain
PfamPF008471.1E-11135186IPR001471AP2/ERF domain
CDDcd000185.50E-23135196No hitNo description
SMARTSM003801.3E-26136200IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-18136195IPR001471AP2/ERF domain
PROSITE profilePS5103218.307136194IPR001471AP2/ERF domain
PRINTSPR003672.9E-6176196IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0010187Biological Processnegative regulation of seed germination
GO:0040008Biological Processregulation of growth
GO:0045723Biological Processpositive regulation of fatty acid biosynthetic process
GO:1901959Biological Processpositive regulation of cutin biosynthetic process
GO:0000981Molecular FunctionRNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MAKRATAVAT PPEEPILRSK RSRKSIPRES PQQRSSVYRG VTRHRWTGRY EAHLWDKDCW  60
NESQNKKGRQ GAYDDEKAAA HAYDLAALKY WGHDTTLNFP VSSYESELKE MEAQSREEYI  120
GSLRRKSSGF SRGVSKYRGV ARHHHNGRWE ARIGRVLGNK YLYLGTYATQ EEAAIAYDVA  180
AIEYRGLNAV TNFDLSHYVK WIKSFRRSSD QSGAVGQEAP AQNSGATEEA EIVPSTLALF  240
LQSSKFREML VEQTAAVCSQ SEPKPPRRCF PDDIQTSFDF QDSSTFADEH DIIFGNYDSF  300
ASAIFPCELD A
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678419622
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028051280.11e-150AP2-like ethylene-responsive transcription factor At1g16060 isoform X1
RefseqXP_028051281.11e-150AP2-like ethylene-responsive transcription factor At1g16060 isoform X2
SwissprotQ94AN41e-106AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A2K2B9731e-148A0A2K2B973_POPTR; Uncharacterized protein
STRINGXP_009757386.11e-145(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18152464
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.11e-106ARIA-interacting double AP2 domain protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]