PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678420178
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family C2H2
Protein Properties Length: 189aa    MW: 20616.2 Da    PI: 8.2504
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678420178genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.60.000866991123
               EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
               ++C+ C k F ++  L  H++ H
  678420178 69 FSCNFCRKKFCSSQALGGHQNAH 91
               89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.17E-66696No hitNo description
Gene3DG3DSA:3.30.160.600.0016795IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.2616996IPR007087Zinc finger, C2H2
PROSITE patternPS0002807191IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MPMKTQDVDE MAYSKASLPQ ARPDILNDPA TGHEMYGEQP LKLELTLTLG PRCLSEEHHR  60
HPPRPSRVFS CNFCRKKFCS SQALGGHQNA HRRERSLAKT AMRMRILPFR SLGVESHSSL  120
NQTIFHGPGT DCIGRANVSS IHEEPELSWP GSFRRDGGAA DTGGSSSDAN VGGSSPTASS  180
PIPDLNLKL
Cis-element ? help Back to Top
SourceLink
PlantRegMap678420178
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011070525.14e-33zinc finger protein 4
RefseqXP_011070527.14e-33zinc finger protein 4
RefseqXP_011070528.14e-33zinc finger protein 4
RefseqXP_011070529.14e-33zinc finger protein 4
RefseqXP_011070530.14e-33zinc finger protein 4
RefseqXP_011070531.14e-33zinc finger protein 4
TrEMBLA0A068UAD43e-28A0A068UAD4_COFCA; Uncharacterized protein
STRINGPGSC0003DMT4000758989e-28(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12832347
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66140.14e-19zinc finger protein 4