PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678422365

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

SBP

Protein Properties

Length: 217aa MW: 24208.7 Da PI: 9.4257

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678422365	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	94.2	1.3e-29	86	155	1	77
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +CqvegC++dl++ak+yhrrhk+Ce+hsk+p v+v+g+e+r fh+lsefD++krsCr+rL++hn+rrr+ q 678422365 86 CCQVEGCRVDLKTAKDYHRRHKICEKHSKSPRVIVAGMERR-------FHDLSEFDDKKRSCRKRLNDHNARRRRVQ 155 6************************************96.......7***********************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	3.1E-24	80	141	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	24.564	84	154	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	3.43E-29	85	159	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	6.7E-22	87	153	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 217 aa Download sequence Send to blast
MESNSLSSSQ LEWRDLVLYS GTQKLMSLES NGLGTSSSSN CLLSADQLGC LSSSYKKQHV 60 IASSLTVSAS PMKRARVSGA HARNPCCQVE GCRVDLKTAK DYHRRHKICE KHSKSPRVIV 120 AGMERRFHDL SEFDDKKRSC RKRLNDHNAR RRRVQLETIQ LHPLRPSSSF YGSFEISCFQ 180 LIIIASSVDF LLCMGRCHEN AAAWVVEPGP ILAAPTA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	4e-20	87	153	11	84	squamosa promoter binding protein-like 4
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	135	152	KKRSCRKRLNDHNARRRR

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678422365

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305\|PubMed:16861571}.
UniProt	INDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305\|PubMed:16861571}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022888133.1	7e-44	squamosa promoter-binding-like protein 12 isoform X1
Swissprot	A2YGR5	2e-33	SPL12_ORYSI; Squamosa promoter-binding-like protein 12
Swissprot	Q5Z818	2e-33	SPL12_ORYSJ; Squamosa promoter-binding-like protein 12
STRING	XP_010252163.1	1e-39	(Nelumbo nucifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA13644	12	16

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G27370.4	4e-31	squamosa promoter binding protein-like 10

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Liu Q, et al. The alteration in the architecture of a T-DNA insertion rice mutant osmtd1 is caused by up-regulation of MicroRNA156f. J Integr Plant Biol, 2015. 57(10): p. 819-29 [PMID:25677853]