PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678422882
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family C2H2
Protein Properties Length: 437aa    MW: 47917.6 Da    PI: 6.8216
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678422882genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H221.94.6e-07220241223
                EETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                 C +Cgk F+r  nL+ H+r H
  678422882 220 FCDICGKGFKRDANLRMHMRAH 241
                6*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.64E-6216242No hitNo description
Gene3DG3DSA:3.30.160.607.8E-6219241IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.905219246IPR007087Zinc finger, C2H2
SMARTSM003550.0017219241IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280221241IPR007087Zinc finger, C2H2
SMARTSM0035555267300IPR015880Zinc finger, C2H2-like
SMARTSM0035549305327IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 437 aa     Download sequence    Send to blast
MASLFLAYLE FSETMSFLGD MRYPPAAAKT PGSSAGVSTT TSGFDDPRVP LMNLSVVRAR  60
MDFLQKFLSD SVNNNVLLGH PEMEMVSSEI ASAIQQIIVN GAALISANRT LPGVRSEQGY  120
PGVNPEVLVS PKGESRVDEV LKFEDHDIVE LDAIIVNGAA LISANRTLPG VRSEQGYPGV  180
NPEVLVSPKG ESRVDEVLKF EDHDIVELDA VELLAEHIHF CDICGKGFKR DANLRMHMRA  240
HGNQFKTLEA LSKPGKSDEI VSRRVKFSCP FVGCNRNKLH KKFRPLKSAI CVKNHFKRSH  300
CPKTHTCTRC NKNSFSVMAD LKSHLKHCGD TRWRCSCGTN FSRKDKLFGH IALFEGHMPA  360
VLLEKGSAPP AVAEAVTAEA DVINTIDTSS GTSNGFENTN LHLYGLSSLD DFLYQEVLNS  420
PVSGYGLEFG VEGFFIL
Cis-element ? help Back to Top
SourceLink
PlantRegMap678422882
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027076102.11e-134protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like
TrEMBLA0A068TYT61e-134A0A068TYT6_COFCA; Uncharacterized protein
STRINGcassava4.1_009526m1e-126(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA100002126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.32e-75C2H2 family protein