PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678423707

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

C2H2

Protein Properties

Length: 235aa MW: 25906.9 Da PI: 6.5074

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678423707	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.2	2.9e-05	80	102	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg+ F ++ L H++ H 678423707 80 FSCNYCGRKFYSSQALGGHQNAH 102 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	5.23E-7	77	107	No hit	No description
Gene3D	G3DSA:3.30.160.60	2.1E-4	78	106	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	12.383	80	107	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	82	102	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0044212	Molecular Function	transcription regulatory region DNA binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 235 aa Download sequence Send to blast
MSPNVIIESE DESEVSSQVL SSNASAQEES KALEDSSNHK QGATHTVKLD LTLGMTMPEA 60 ETGEDSTSTG DHPARPSRVF SCNYCGRKFY SSQALGGHQN AHKRERSIAK RAMRFGMISE 120 RYPSVPSLPI HGVPFRSLGI DAHGSVHQPV FQTYEGPNMH WIRKEAGLPE RHGYIGVPQY 180 MECDDYKLLW PGSFRQVGDL PENLSLNSHH ASYIAMVSTT SPTPPSSIPD LNLKL

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as negative regulator of abscisic acid (ABA) signaling during germination and early seedling development. {ECO:0000269\|PubMed:24808098}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678423707

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006355049.1	1e-64	PREDICTED: zinc finger protein 4-like
Refseq	XP_015167649.1	1e-64	PREDICTED: zinc finger protein 4-like
Refseq	XP_015167650.1	1e-64	PREDICTED: zinc finger protein 4-like
Refseq	XP_015167651.1	1e-64	PREDICTED: zinc finger protein 4-like
Swissprot	Q39263	1e-33	ZFP4_ARATH; Zinc finger protein 4
TrEMBL	A0A2G9H1Y7	3e-67	A0A2G9H1Y7_9LAMI; Uncharacterized protein
STRING	PGSC0003DMT400075898	5e-64	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1283	23	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66140.1	1e-34	zinc finger protein 4

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Joseph MP, et al. The Arabidopsis ZINC FINGER PROTEIN3 Interferes with Abscisic Acid and Light Signaling in Seed Germination and Plant Development. Plant Physiol., 2014. 165(3): p. 1203-1220 [PMID:24808098] Li B, et al. Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis. Plant Cell, 2018. 30(1): p. 178-195 [PMID:29317470]