PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678425711
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family Trihelix
Protein Properties Length: 452aa    MW: 49648.9 Da    PI: 7.1468
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678425711genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix53.46.8e-1799184186
   trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                +W++  +  L++a+ ++  +l+rg+l++ +Weev++++  + +  ++s +qCk+k +nl+kr+k ++++ + +  +  s++p+f+q+e
  678425711  99 EWSDTAIASLLDAYIDKFVHLNRGNLRGRDWEEVASVVseKCENQTKSVEQCKNKVDNLKKRFKLERNRLSHG--GLMSHWPWFKQME 184
                5*************************************555567799************************97..55669*******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.4E-2097186No hitNo description
Gene3DG3DSA:3.40.1160.104.6E-6226272IPR001048Aspartate/glutamate/uridylate kinase
SuperFamilySSF536331.57E-49229442IPR001048Aspartate/glutamate/uridylate kinase
CDDcd042541.77E-98231443No hitNo description
Gene3DG3DSA:3.40.1160.106.7E-51281442IPR001048Aspartate/glutamate/uridylate kinase
PfamPF006961.8E-18282422IPR001048Aspartate/glutamate/uridylate kinase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005737Cellular Componentcytoplasm
Sequence ? help Back to Top
Protein Sequence    Length: 452 aa     Download sequence    Send to blast
MASCGNDFSI LDDHQNPSLN QVTPSLPATQ TSPYEITPYD HDSDPYDSDP NPNSGSRKRL  60
GDRDRDGIHS QNHSHGSSSK RGRVYSSSGS ADYRKDREEW SDTAIASLLD AYIDKFVHLN  120
RGNLRGRDWE EVASVVSEKC ENQTKSVEQC KNKVDNLKKR FKLERNRLSH GGLMSHWPWF  180
KQMEQIVGSS LTAKAATEEE KVLRWIGTLT NYAGGHINNI KAKPLNNLRW RRVVFKISGT  240
ALSGSSPNNI DPKVAMLIAR EVSIACNIGV EVLDKYFILD TGMMATVMNS ILLQSALEKF  300
GVQTRVQSAF AMPEVAEPYN RQRAIKHLEK GRVVIFGGIG AGTGNPLFST DTAAALRASE  360
IHAEAVLKGT SVDGVFVCDS RNNSMVAEHI SFRDLASGGA SPMDMMAATF CEENGIPVVV  420
FNLHEPGNIS RALCGERIGT LIDQTVRCAD GC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1z9d_A8e-482294516246uridylate kinase
1z9d_B8e-482294516246uridylate kinase
1z9d_C8e-482294516246uridylate kinase
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00340DAPTransfer from AT3G10030Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap678425711
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011101478.10.0uncharacterized protein LOC105179524
SwissprotQ2JS422e-63PYRH_SYNJA; Uridylate kinase
TrEMBLA0A4D9AKP20.0A0A4D9AKP2_SALSN; Uridylate kinase
STRINGMigut.L01743.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA87282427
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.11e-162Trihelix family protein