PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678425846

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

Trihelix

Protein Properties

Length: 313aa MW: 37197.5 Da PI: 7.7389

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678425846	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	35.8	2.1e-11	3	49	39	87
trihelix 39 rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 +e g++rs k+C+ek+enl k+ykk++ +++ + + +++++f qlea 678425846 3 EEYGYQRSGKKCREKLENLYKYYKKTRLDNSRMQ--EGKHYKFFGQLEA 49 688**************************975..4456****985 PP
2	trihelix	25.2	4.4e-08	207	262	6	60
trihelix 6 evlaLiearremeerlrrg.klkkplWeevskkmrergferspkqCkekwenlnkr 60 e Li++r+ m ++g +++ lWeev++km+ g +r+ ++ kekw+ +r 678425846 207 EMWRLIQVRSGMRAGGEDGvLSEEELWEEVARKMATFGHQRNGIMWKEKWDHYVTR 262 6778***********9835889************************987665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	8.7E-7	2	50	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 313 aa Download sequence Send to blast
MLEEYGYQRS GKKCREKLEN LYKYYKKTRL DNSRMQEGKH YKFFGQLEAL YGGASKSASM 60 EFGYFNNDIY TDPYSEHKSN YCDLVEISSG WSDVQKQNED RKGKKRRVKR SIENKIMNFI 120 DEQMTSVIEK QEMWMAKVVK TIEKREFERM LREEEWRKQD AARIEREHTY WANEKSWIEA 180 RDAALMEAFH QAATKQHSGA DKSPEYEMWR LIQVRSGMRA GGEDGVLSEE ELWEEVARKM 240 ATFGHQRNGI MWKEKWDHYV TRGNNKSKEN PATINHDDHP GTSSLYENLE GSYCDKGIEN 300 TKRQHHNHWG YGF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	103	108	KKRRVK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678425846

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020547013.1	2e-77	trihelix transcription factor PTL-like
TrEMBL	A0A2G9G8M2	6e-74	A0A2G9G8M2_9LAMI; Transcription factor GT-2
STRING	XP_009613783.1	4e-70	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3063	24	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03680.1	4e-46	Trihelix family protein