PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678427195

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

HD-ZIP

Protein Properties

Length: 213aa MW: 24915.6 Da PI: 10.0791

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678427195	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	55.7	8.2e-18	41	91	6	56
S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++keql++Le+ F ++++ e++ LA+ lgL+ rq+ vWFqNrRa++k 678427195 41 GMNKEQLRTLERWFMLEKKLLPERKMYLAQALGLPPRQIAVWFQNRRARWK 91 5799**********************************************9 PP
2	HD-ZIP_I/II	111.5	5.6e-36	38	127	2	91
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kr ++keq+++LE+ F e+kL perK+ la++Lgl prq+avWFqnrRAR+ktkqlEk+ye Lkr+y al++e+++L++++++L++ l 678427195 38 RKRGMNKEQLRTLERWFMLEKKLLPERKMYLAQALGLPPRQIAVWFQNRRARWKTKQLEKEYELLKRRYGALMAEQDALKAQNQRLHAML 127 8999**********************************************************************************9776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	5.56E-19	27	95	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.261	33	93	IPR001356	Homeobox domain
SMART	SM00389	9.2E-19	36	97	IPR001356	Homeobox domain
CDD	cd00086	7.65E-15	38	94	No hit	No description
Pfam	PF00046	3.2E-15	41	91	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	3.5E-19	42	100	IPR009057	Homeodomain-like
PRINTS	PR00031	5.8E-5	64	73	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	68	91	IPR017970	Homeobox, conserved site
PRINTS	PR00031	5.8E-5	73	89	IPR000047	Helix-turn-helix motif
Pfam	PF02183	1.0E-11	93	132	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 213 aa Download sequence Send to blast
MADFVRLNHQ GQAKPTVSAS LHPSSVGVTE QLPEDGDRKR GMNKEQLRTL ERWFMLEKKL 60 LPERKMYLAQ ALGLPPRQIA VWFQNRRARW KTKQLEKEYE LLKRRYGALM AEQDALKAQN 120 QRLHAMLLSL RAWQQPKKPI NPKRETEDFC VDSKHTDRMI HQSRGCFQEA MPLQLQLQGA 180 KMDQMDESST FFNNFFSSID VEGGSMLWLD QPN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	85	93	RRARWKTKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may act in the sucrose-signaling pathway. {ECO:0000269\|PubMed:11292072}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678427195

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001296720.1	4e-43	jasmoni isoform 2
Refseq	NP_001296723.1	8e-44	jasmoni isoform 1
Swissprot	Q8LC03	4e-36	ATB13_ARATH; Homeobox-leucine zipper protein ATHB-13
TrEMBL	A0A2G9I5B7	9e-43	A0A2G9I5B7_9LAMI; Uncharacterized protein
STRING	Solyc05g007180.2.1	2e-42	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA848	24	98

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69780.1	3e-38	HD-ZIP family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Ribone PA,Capella M,Chan RL Functional characterization of the homeodomain leucine zipper I transcription factor AtHB13 reveals a crucial role in Arabidopsis development. J. Exp. Bot., 2015. 66(19): p. 5929-43 [PMID:26136262] Wang X, et al. Overexpressed BRH1, a RING finger gene, alters rosette leaf shape in Arabidopsis thaliana. Sci China Life Sci, 2018. 61(1): p. 79-87 [PMID:28887625] Ebrahimian-Motlagh S, et al. JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13. Front Plant Sci, 2017. 8: p. 2118 [PMID:29326734]