PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678428438
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family MIKC_MADS
Protein Properties Length: 206aa    MW: 23604.1 Da    PI: 9.1942
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678428438genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF95.62.2e-301059251
               ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
     SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
               rien s rqvtfskRrng+lKKA+ELSvLCdaeva+iifs++g+lye+ss
  678428438 10 RIENASSRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSQKGRLYEFSS 59
               8***********************************************96 PP
2K-box66.59.2e-2377169697
      K-box   6 gks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                ++   +e+  ++l++++a   ++ie L+ +qR+llG++++s+s++eLq++ +qLe sl+kiRs+K +++ +qi +lq+kek l + n+aL+ +
  678428438  77 TTGpEAEERIQQLKHDAAICAQKIELLEASQRKLLGQEVGSCSMEELQEIDNQLEISLNKIRSRKAQMFNDQIAKLQEKEKLLLQVNQALSFR 169
                3334788899*******************************************************************************9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.744161IPR002100Transcription factor, MADS-box
SMARTSM004321.8E-40160IPR002100Transcription factor, MADS-box
CDDcd002651.03E-40272No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-31323IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.06E-31378IPR002100Transcription factor, MADS-box
PfamPF003193.9E-271057IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-312338IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-313859IPR002100Transcription factor, MADS-box
PfamPF014863.6E-2385170IPR002487Transcription factor, K-box
PROSITE profilePS5129713.62686176IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009838Biological Processabscission
GO:0009909Biological Processregulation of flower development
GO:0010150Biological Processleaf senescence
GO:0080187Biological Processfloral organ senescence
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MARGKVQLRR IENASSRQVT FSKRRNGLLK KAYELSVLCD AEVALIIFSQ KGRLYEFSSS  60
SVQKLIQKYL EHRKEQTTGP EAEERIQQLK HDAAICAQKI ELLEASQRKL LGQEVGSCSM  120
EELQEIDNQL EISLNKIRSR KAQMFNDQIA KLQEKEKLLL QVNQALSFRL QNEYKHVEAG  180
SWCHSTQNLE VVTELFIGLG VPTTKN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A4e-22172172MEF2C
5f28_B4e-22172172MEF2C
5f28_C4e-22172172MEF2C
5f28_D4e-22172172MEF2C
6byy_A5e-22191193MEF2 CHIMERA
6byy_B5e-22191193MEF2 CHIMERA
6byy_C5e-22191193MEF2 CHIMERA
6byy_D5e-22191193MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMADS-box transcription factor that acts with AGL71 and AGL72 in the control of flowering time. Promotes flowering at the shoot apical and axillary meristems. Seems to act through a gibberellin-dependent pathway. Interacts genetically with SOC1 and its expression is directly regulated by SOC1 (PubMed:21609362). Plays a role in controlling flower organ senescence and abscission by repressing ethylene responses and regulating the expression of BOP2 and IDA (PubMed:21689171). {ECO:0000269|PubMed:21609362, ECO:0000269|PubMed:21689171}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00576DAPTransfer from AT5G62165Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap678428438
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011076262.13e-90MADS-box protein AGL42
RefseqXP_011076263.13e-90MADS-box protein AGL42
RefseqXP_020548859.13e-90MADS-box protein AGL42
SwissprotQ9FIS16e-68AGL42_ARATH; MADS-box protein AGL42
TrEMBLS8CQ925e-92S8CQ92_9LAMI; Uncharacterized protein
STRINGMigut.F00397.1.p4e-82(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45660.19e-66AGAMOUS-like 20