PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678429273
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family Trihelix
Protein Properties Length: 412aa    MW: 46259.5 Da    PI: 6.1595
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678429273genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix76.73.7e-2480164286
   trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                W ++e+++L+ +r++++  ++++k++k+lWe +s km+e+gf rsp++C++kw+nl k+ykk k+++ +++ + s +   ++++e
  678429273  80 WVQEETRLLVSLRKDIDLLFNTSKSNKHLWENISMKMKEKGFDRSPTMCTDKWRNLLKEYKKAKHNSPDGSGNGSAKLNCYKDIE 164
                **********************************************************************999999999999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.7E-569142IPR009057Homeodomain-like
PROSITE profilePS500908.52572136IPR017877Myb-like domain
SMARTSM007174.0E-576138IPR001005SANT/Myb domain
CDDcd122038.36E-2778143No hitNo description
PfamPF138373.7E-1979165No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MFMSDKRSAE EELALDFYNG KQESPHQNNM IIPVPAESSL QLTDVVVPDN NGGDDHSNTF  60
NHNHSNPGCS SGPKKRAETW VQEETRLLVS LRKDIDLLFN TSKSNKHLWE NISMKMKEKG  120
FDRSPTMCTD KWRNLLKEYK KAKHNSPDGS GNGSAKLNCY KDIEEILNER NKNGPSWKNP  180
SVSNNAGASK VDSFMNFADK AIDETSLTFG PVEANGRSTL NLERSLDHEG HPLAIAAADT  240
IGAEGVSPWN WRGTPGSGED SNPYEGRVII VKFMAYTKRV GIDASSDAIK EAIKSAFGLR  300
TKRAFWLEDE DNVIRAIDRN MPLGNYTIHV DEGVTVKVCY YEESSHMPVH SEDKTFYTDD  360
DFHGFLARRG WTCLREYNGY RYIDSIGELC PGAVYRGVHS KAGDFQMHNQ CL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2jmw_A2e-3874162186DNA binding protein GT-1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00640PBMTransfer from MDP0000164819Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap678429273
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011071308.10.0trihelix transcription factor GT-4-like
SwissprotQ9LU921e-154TGT4_ARATH; Trihelix transcription factor GT-4
TrEMBLS8CPS60.0S8CPS6_9LAMI; Uncharacterized protein
STRINGMigut.E00236.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA51132136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13450.11e-155Trihelix family protein