PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678430229
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family C2H2
Protein Properties Length: 187aa    MW: 20386 Da    PI: 8.2137
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678430229genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H220.41.4e-06119141123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                y+C+ Cg++F+++  L  H+ +H
  678430229 119 YTCKECGEVFKTPQALGGHMTKH 141
                9*******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.23E-7116146No hitNo description
Gene3DG3DSA:3.30.160.603.1E-5117145IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139125.1E-10118144IPR007087Zinc finger, C2H2
PROSITE profilePS5015712.03119146IPR007087Zinc finger, C2H2
SMARTSM003550.0012119141IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280121141IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MAGSKEDQWS AISVTPTKFV LRRSPVSNHG AEMGGETEGP RRLNGVPVYN KEMLEAATTL  60
MLLRNGFFGG KKDFDTPDMV EAAESLVTLQ NGDQSENRVK KPLPNNGSVT RVLGENKVYT  120
CKECGEVFKT PQALGGHMTK HRKEKSNATE VVKDDKKRKM ENVGSTPNGG SESDAPVDLD  180
LKLGSLY
Cis-element ? help Back to Top
SourceLink
PlantRegMap678430229
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA2262822
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G27880.17e-07C2H2 family protein