PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678430423
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family C2H2
Protein Properties Length: 188aa    MW: 20688.6 Da    PI: 8.7774
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678430423genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.30.000124062123
               EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
               y+C  C + F++   L  H+++H
  678430423 40 YTCAFCRREFRSAQALGGHMNVH 62
               9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.03E-63767No hitNo description
PROSITE profilePS5015711.0114067IPR007087Zinc finger, C2H2
PROSITE patternPS0002804262IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MIRKSKRSGC DSDDDSWQVR AFQEDAAANM LGCTWPPRSY TCAFCRREFR SAQALGGHMN  60
VHRRDRARLH ELLPAPKAGD FMAAAALRNH NPYHLPNPSS ILIPNPHMAG FSSLLPITPS  120
MLAPDPHLGL PSFLPIPPGF HKTHPDPPHS GEASNPHHGC LSIDHGYPPF GKVDLELRLG  180
QKRPPPAP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A4e-133562229superman protein
2l1o_A4e-133562229Transcriptional regulator SUPERMAN
Cis-element ? help Back to Top
SourceLink
PlantRegMap678430423
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A4D9A9A11e-34A0A4D9A9A1_SALSN; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59532133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17810.18e-32C2H2 family protein