PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678431200

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

MIKC_MADS

Protein Properties

Length: 216aa MW: 24764.5 Da PI: 9.4534

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678431200	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	81	7.7e-26	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+i++ s rqvtfskRr+g++KKA+EL vLCda+va+++fss+gkl+++ss 678431200 9 KKIDDPSIRQVTFSKRRKGLFKKAQELAVLCDADVALVVFSSSGKLFDFSS 59 6899*********************************************96 PP
2	K-box	45.7	2.8e-16	119	196	21	98
K-box 21 lakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 ++L ke+ + ++ +R++ e+L Lsl eLq+Le+ Le +l+++ +kK+ ++++ie+lq+k k+l+++n++L+++l 678431200 119 CSRLSKEVAEKRHLIRRMRAEELLGLSLDELQHLESSLEAGLRRVTEKKEGRMMKEIEQLQEKGKRLRQDNRRLKQQL 196 57889999999999*************************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	28.679	1	61	IPR002100	Transcription factor, MADS-box
SMART	SM00432	9.0E-36	1	60	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.27E-27	3	70	IPR002100	Transcription factor, MADS-box
CDD	cd00265	9.63E-34	3	70	No hit	No description
PRINTS	PR00404	9.6E-25	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	8.6E-25	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	9.6E-25	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	9.6E-25	38	59	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS51297	11.946	112	202	IPR002487	Transcription factor, K-box
Pfam	PF01486	2.9E-13	119	196	IPR002487	Transcription factor, K-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 216 aa Download sequence Send to blast
MSKKKIEMKK IDDPSIRQVT FSKRRKGLFK KAQELAVLCD ADVALVVFSS SGKLFDFSSS 60 RSVKDLLERH DLQLKNIEEM EQPSLETQVP PDHYTSWPHF GFQFIPIYEL ELGVQYSSCS 120 RLSKEVAEKR HLIRRMRAEE LLGLSLDELQ HLESSLEAGL RRVTEKKEGR MMKEIEQLQE 180 KGKRLRQDNR RLKQQLLDCG GAGSSSMISA APIQGT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6byy_A	5e-17	1	68	1	68	MEF2 CHIMERA
6byy_B	5e-17	1	68	1	68	MEF2 CHIMERA
6byy_C	5e-17	1	68	1	68	MEF2 CHIMERA
6byy_D	5e-17	1	68	1	68	MEF2 CHIMERA
6bz1_A	4e-17	1	68	1	68	MEF2 CHIMERA
6bz1_B	4e-17	1	68	1	68	MEF2 CHIMERA
6bz1_C	4e-17	1	68	1	68	MEF2 CHIMERA
6bz1_D	4e-17	1	68	1	68	MEF2 CHIMERA
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Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor that coordinates gene expression underlying the differentiation of the pedicel abscission zone. May also be involved in the maintenance of the inflorescence meristem state.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678431200

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011097479.1	2e-69	MADS-box protein JOINTLESS
Swissprot	Q9FUY6	3e-63	JOIN_SOLLC; MADS-box protein JOINTLESS
TrEMBL	A0A068U051	1e-67	A0A068U051_COFCA; Uncharacterized protein
STRING	XP_009783886.1	1e-64	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA938	23	77

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22540.2	1e-40	MIKC_MADS family protein

Publications ? help Back to Top
Nakano T,Kato H,Shima Y,Ito Y Apple SVP Family MADS-Box Proteins and the Tomato Pedicel Abscission Zone Regulator JOINTLESS have Similar Molecular Activities. Plant Cell Physiol., 2015. 56(6): p. 1097-106 [PMID:25746985]