PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678431744
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family TCP
Protein Properties Length: 243aa    MW: 27082.6 Da    PI: 7.8706
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678431744genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP108.78.8e-34131412108
        TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.....eaesssssasnsssg........ 88 
                 g+kdrhsk++T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WL+++ak+ i+el+ ++ ++ s++            sa+++++g        
  678431744  13 FGRKDRHSKVCTVKGLRDRRVRLSVPTAIQIYDLQDRLGLSQPSKVVDWLMNAAKKDIDELPPLQIPPGSFMsqsliA----MLSAQSDKQGlkvsesnd 108
                689*************************************************************99998777533331....222222222244556667 PP

        TCP  89 ..............kaaksaakskksqksaasal 108
                              ++ +s+++s+++q + as++
  678431744 109 gcwpcvsesrfglrQNVPSSHNSNSNQMN-ASHN 141
                89999866666664222222222222222.2223 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.2E-2914138IPR005333Transcription factor, TCP
PROSITE profilePS5136931.5931573IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MKDPRIVGAS RAFGRKDRHS KVCTVKGLRD RRVRLSVPTA IQIYDLQDRL GLSQPSKVVD  60
WLMNAAKKDI DELPPLQIPP GSFMSQSLIA MLSAQSDKQG LKVSESNDGC WPCVSESRFG  120
LRQNVPSSHN SNSNQMNASH NSFLKWDSSD LCLSHPPRSS IGEQISASIE GDWNHPSELL  180
QQPPLMYHNG MVTVTQPYLP LQRFDSESEA ARAIHLLDMT QINENAVQNK GQCFVHGGCN  240
EFK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A5e-192074155Putative transcription factor PCF6
5zkt_B5e-192074155Putative transcription factor PCF6
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap678431744
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011099021.17e-54transcription factor TCP5-like
RefseqXP_011099023.17e-54transcription factor TCP5-like
TrEMBLA0A1S3XAZ71e-49A0A1S3XAZ7_TOBAC; transcription factor TCP13-like
STRINGXP_009623901.12e-50(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8212499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60970.16e-42TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5