PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678433294
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family MYB
Protein Properties Length: 244aa    MW: 27317.7 Da    PI: 8.3925
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678433294genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding551.9e-171462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEde+l +++++ G+g +W + ++++g++R++k+c++rw++yl
        678433294 14 KGPWSPEEDEKLREYIEKNGTGgNWIALPHKVGLNRCGKSCRLRWLNYL 62
                     79*********************************************97 PP
2Myb_DNA-binding33.69.1e-1169111246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g ++ eE   +  ++   G++ W+ Ia+ ++ gRt++++k++w++
        678433294  69 GEFSDEENRVICSLFSAIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                      789******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129422.693966IPR017930Myb domain
SuperFamilySSF466891.3E-2711109IPR009057Homeodomain-like
SMARTSM007177.1E-141364IPR001005SANT/Myb domain
PfamPF002498.6E-171462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.8E-241569IPR009057Homeodomain-like
CDDcd001675.21E-111662No hitNo description
PROSITE profilePS5129413.51467117IPR017930Myb domain
SMARTSM007171.3E-967115IPR001005SANT/Myb domain
PfamPF002493.6E-969111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-2170116IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MGRAPCCDKA NVKKGPWSPE EDEKLREYIE KNGTGGNWIA LPHKVGLNRC GKSCRLRWLN  60
YLRPNIKHGE FSDEENRVIC SLFSAIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKRFMAS  120
QGQSAPPQSF STLLNHPTNL LSPNSNAGFH YEPTPTNLLV FGGGQAARTS SSPEGSSCIT  180
NQMNNGNHCS LISDNEHRFN PNFGRNDALV YDGIQELKQM ICSSPISSAN LEFYMDYPLD  240
NVRF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-25141177108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factors that activates genes required for endodermal differentiation but represses genes involved in proliferative divisions, thus regulating the transition from proliferation to differentiation in root endodermis (PubMed:26371322). Required for Casparian strip formation by positively regulating the expression of the Casparian strip genes CASP1, PER64 and ESB1 and other endodermis-specific genes, thus triggering correct localized lignin biosynthesis in root endodermis and subsequently regulating global ion homeostasis (PubMed:26124109, PubMed:26371322). {ECO:0000269|PubMed:26124109, ECO:0000269|PubMed:26371322}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678433294
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Directly up-regulated by SCARECROW (SCR), as part of the differentiation program controlled by SHORT-ROOT (SHR). {ECO:0000269|PubMed:24517883, ECO:0000269|PubMed:26371322}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021611134.14e-79transcription factor RAX2-like
SwissprotQ9FKL26e-73MYB36_ARATH; Transcription factor MYB36
TrEMBLA0A059PSK56e-81A0A059PSK5_SALMI; MYB-related transcription factor
STRINGcassava4.1_030463m2e-78(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.13e-75myb domain protein 36
Publications ? help Back to Top
  1. Fernández-Marcos M, et al.
    Control of Arabidopsis lateral root primordium boundaries by MYB36.
    New Phytol., 2017. 213(1): p. 105-112
    [PMID:27891649]