PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678433664
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family ARF
Protein Properties Length: 1590aa    MW: 174877 Da    PI: 6.9097
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678433664genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B370.32.5e-22146247199
                EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                f+k+lt sd++++g +++p++ ae++       ++++++  +l+ +d++ ++W +++iyr++++r++lt+GW+ Fv+ ++L +gD+v F   ++++++l+
  678433664 146 FCKTLTASDTSTHGGFSVPRRAAEKIfppldftMQPPAQ--ELVARDLHDNVWAFRHIYRGQPKRHLLTTGWSLFVSGKRLLAGDSVFFI--RDEKQQLL 241
                99*****************************96555444..8************************************************..5688889* PP

                EEEE-S CS
         B3  94 vkvfrk 99 
                ++++r+
  678433664 242 LGIRRA 247
                ***997 PP
2Auxin_resp121.94.6e-40272354183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 aahaas++s+F+v+YnPras+seFv++++k+ ka+ +++s+GmRf+m+fete+s +rr++Gt++g+sdldpvrW+nS+Wr+L+
   678433664 272 AAHAASNNSPFTVFYNPRASPSEFVIPLAKYYKAVCNQISLGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKNSQWRNLQ 354
                 79*******************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.4E-39137261IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.49E-42137275IPR015300DNA-binding pseudobarrel domain
CDDcd100172.10E-18145237No hitNo description
PROSITE profilePS5086311.885146248IPR003340B3 DNA binding domain
SMARTSM010196.8E-22146248IPR003340B3 DNA binding domain
PfamPF023622.6E-20146247IPR003340B3 DNA binding domain
PfamPF065071.4E-35272354IPR010525Auxin response factor
PROSITE profilePS5174520.7449601040IPR000270PB1 domain
Gene3DG3DSA:3.30.559.101.9E-5511421336IPR023213Chloramphenicol acetyltransferase-like domain
PfamPF024589.3E-10511421579IPR003480Transferase
Gene3DG3DSA:3.30.559.103.7E-5313681581IPR023213Chloramphenicol acetyltransferase-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0016747Molecular Functiontransferase activity, transferring acyl groups other than amino-acyl groups
Sequence ? help Back to Top
Protein Sequence    Length: 1590 aa     Download sequence    Send to blast
MKVPTNGGGG GSAAAAAAAP TPTPPSNTSA VEGDPKKSIN RELWHACAGP LVNLPAAGTH  60
VVYFPQGHSE QVAASMEKDM DGGIPNYPNL PSKLLCVLHT ITLHSDPDTD EVYAQMTLQP  120
LPSFDKDALL RSDLSMRSNK PQMEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDFTMQ  180
PPAQELVARD LHDNVWAFRH IYRGQPKRHL LTTGWSLFVS GKRLLAGDSV FFIRDEKQQL  240
LLGIRRANRQ PNNLSSSVLS SDSMHIGILA AAAHAASNNS PFTVFYNPRA SPSEFVIPLA  300
KYYKAVCNQI SLGMRFRMMF ETEESGTRRY MGTITGISDL DPVRWKNSQW RNLQVGWDES  360
TAGEKRTRVS IWEIEPVTAP FFIWPTPPFF RSKRPRQPGM SDDDSSDSDV LFRRATSWGG  420
DDLSFKCPQA LPGLSLAQWM NIQQNSSLAN TLQPSIPTSL PNSILQNLSG SDVSRQLGLP  480
QQNNFQSNSM RPIQPVDDQL QSLPSSSLNA VGSLMSPQEQ LSDANLHPRQ NLVAQGLATK  540
FPASQVPAQF MQSQGLVHPQ ASLPQQQQSL VSQQLQRNLS ENMAHLQQHI PSQSLLPPPP  600
SDMLSHQLLM PDNQIQIQLL QKLQQQQNSL LVQQSAMAQP SLSQLVDQSK LRDVPRDFGQ  660
SVSATMDAPQ ATSSMQQTPR STTSQYGNAF DTLPQQAKSH HSQQSGMFSE SNGRLESCLN  720
PINNRISAGA PARGPSAGTE DVPSCSNSPS TNNCANAASS VMVFNSSGQE HVFPNGHLVK  780
QIPTKSEEKP PLSTPKNGNQ GPFASQMYPN PGGGQTEYLD SSSSATSVLS QNDGQVPQNN  840
HSMSFNSQSM MFQNASQEME MHGDPRDNVL LGSHVENHME LPILPDHSMC RNTMGSKEFS  900
AGGSMLLGYD ASKEPQPDFT SSMVSQSFGV TTFSSMEASM NDATLMPRGA WVPQQGARMR  960
TYTKVYKRGA VGRSIDITRY AGYDELKQDL ARRFGIEGQL EDGQRVGWKL VYVDHENDVL  1020
LVGDDPWEYV FLPILHLQQF PCFLLRNFCS DTITILRVVQ GIRELCSLHQ DPISSGSPAD  1080
EPGGSLAVTT TKSPPRVPTL ARSLLPTVED VQPESYVELH ASALPLYKAS IRAYVNPRSN  1140
DMKVMVKKSC IVSPFETTPA GVTPLAEFDQ VGVLCHIPTV YFYRPDRRWR SSGIIETLTA  1200
SLSKALVYFH PLAGRLRSLK GGRLELDCNG DGVVFSVADC DEEMCVLGDF SPSRRFHHLI  1260
PHVDYSVPVE EIPLVLVQLT LFRCGGLCLG VAVSHAVADG RSAAHFISEW ARLARGELIG  1320
ELAVFDRSLL RAGEQPHAEL GTKQVQYKPP PLMIGEVNTE NQRNKKTTAV KLKLSKSQVE  1380
ALKAAANKTT LSTRKPFSRY EAIAAHIWRC TSSARRHIHS QPTGFAICVD VRRRLNPQLP  1440
RTYFGNATMD VIAECLSGEL TMKPLSFAAS KIREAIESVT AEYVNSYIDF LKRYDDFSPL  1500
QDIHALRSGE GPFYGNPNIA VVSWLTLPIF GVDFGWGREI FMGPGTYDCD GDTLLMPADD  1560
DGVAVAICLQ DDCMLQFKRL FFKGLPNFVA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1613337545388Auxin response factor 5
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap678433664
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020553508.10.0auxin response factor 19
TrEMBLA0A2G9HCE80.0A0A2G9HCE8_9LAMI; Auxin response factor
STRINGXP_009762809.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13022465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19