PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678433956
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family bHLH
Protein Properties Length: 308aa    MW: 34113.4 Da    PI: 5.6831
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678433956genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.97.8e-131151541155
                HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                rRR++iN+++  L+ l+P++      K +Ka++L +A+eY+k+Lq
  678433956 115 RRRSKINEKMKALQNLIPNS-----NKTDKASMLDEAIEYLKHLQ 154
                89*****************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.164104153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.58E-16110165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.5E-16111162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-15111159IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.2E-10115154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.26E-11119158No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MANPHGNTRS CDPQEQDEIS LFLRQILLRS SPSSSSSTPQ FDSSSTTPIL PKYQTFPGAG  60
SGSESRSTGV NWALEGTEHD CESEGAGEIM AAEEAAARPI MPPRSSSKRS RAAERRRSKI  120
NEKMKALQNL IPNSNKTDKA SMLDEAIEYL KHLQLQVQML TLRNGLSHYP ICCFPNARIN  180
TFVQPLNGTI SMDQRTPLPS ETIPATFQSS SQVWKALSLS RSPPLCSTFV QMKMVCLFFT  240
PGKDILLQGL PRFDQPVQED RSSEGKAGTA LWPYDSMVKE ELESESTDMA WPEHLLSDFE  300
NTPSSHLS
Cis-element ? help Back to Top
SourceLink
PlantRegMap678433956
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028056424.19e-42transcription factor SPATULA-like
TrEMBLA0A0H3YC582e-42A0A0H3YC58_SALMI; Basic helix-loop-helix transcription factor
STRINGXP_009607890.18e-39(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA98502227
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36930.16e-24bHLH family protein