PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678433967
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family ERF
Protein Properties Length: 158aa    MW: 17527.9 Da    PI: 10.3461
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678433967genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.36.7e-174291255
        AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
               +ykG+r +k +g+WvAe+r+p   +kr r++lg++ ++  Aa+a++ a+ +l+g
  678433967 42 QYKGIRMRK-WGKWVAEVREP---NKRSRIWLGSYSSPVAAARAYDVAAYCLRG 91
               7******99.*******9998...337*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.19E-1741100No hitNo description
PfamPF008473.5E-114291IPR001471AP2/ERF domain
SMARTSM003806.4E-3642105IPR001471AP2/ERF domain
PROSITE profilePS5103222.3394299IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-2042100IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.1E-3042100IPR001471AP2/ERF domain
PRINTSPR003679.8E-134354IPR001471AP2/ERF domain
PRINTSPR003679.8E-1381101IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    Send to blast
MTHSADGFPS RQADGKSHTT KILHPLPPMA EPGEARRRSE KQYKGIRMRK WGKWVAEVRE  60
PNKRSRIWLG SYSSPVAAAR AYDVAAYCLR GSKAKLNFPE EVSAVAPEDL SAASIRKKAA  120
EVGVRVDSTL VAAAAVNTTR FNKEIDLNKE PQPEIHDF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-1641104468ATERF1
3gcc_A5e-1641104468ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678433967
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012840786.11e-51PREDICTED: ethylene-responsive transcription factor RAP2-10-like
SwissprotQ9SNE11e-42ERF11_ARATH; Ethylene-responsive transcription factor ERF011
TrEMBLA0A022R6S43e-50A0A022R6S4_ERYGU; Uncharacterized protein
STRINGMigut.L00172.1.p4e-51(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9432390
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50260.12e-37cooperatively regulated by ethylene and jasmonate 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Shen PC,Hour AL,Liu LD
    Microarray meta-analysis to explore abiotic stress-specific gene expression patterns in Arabidopsis.
    Bot Stud, 2017. 58(1): p. 22
    [PMID:28510204]