PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678434062
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family GATA
Protein Properties Length: 260aa    MW: 28292.3 Da    PI: 5.6622
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678434062genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.76.7e-18171205135
       GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                C +Cg+ +Tp+WR gp g+ktLCnaCG++y++ +l
  678434062 171 CLHCGSETTPQWRAGPLGPKTLCNACGVRYKSGRL 205
                99*****************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004014.8E-16165219IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.914165201IPR000679Zinc finger, GATA-type
SuperFamilySSF577164.04E-15166228No hitNo description
Gene3DG3DSA:3.30.50.102.7E-14168203IPR013088Zinc finger, NHR/GATA-type
CDDcd002025.82E-14170218No hitNo description
PfamPF003201.1E-15171205IPR000679Zinc finger, GATA-type
PROSITE patternPS003440171196IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MKDWSELPEV PFLAAAEEEE LINFDFDFES LIKLSSSSSA SADVTDSLGC GFTSPEGIVE  60
EELEWLSNKD AFPAIESCFG ILSDNPELIL THRSPDTVLR DSNSNTNSTT LVTSCSGTDG  120
SRVPPNPVRH RSTSRRKPRT DFRAFSVDQS SKSTVENTTQ SPETKTTGRS CLHCGSETTP  180
QWRAGPLGPK TLCNACGVRY KSGRLLPEYR PANSPTFSSA LHSNSHRKVV EMRKMKQLGE  240
EGGSSGSGSA SIYSIYHLSS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1128138RHRSTSRRKPR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00377DAPTransfer from AT3G24050Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap678434062
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012829205.18e-64PREDICTED: GATA transcription factor 1-like
TrEMBLA0A022RUZ32e-62A0A022RUZ3_ERYGU; Uncharacterized protein
STRINGMigut.G00615.1.p3e-63(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40762445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24050.12e-39GATA transcription factor 1