PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678434392
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family ARF
Protein Properties Length: 883aa    MW: 97794.5 Da    PI: 6.4762
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678434392genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.84.8e-24164265199
                EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                f+k+lt sd++++g +++p++ ae+        +++   +++l+ +d++ ++W++k+i+r++++r++lt+GW+ Fv a++L +gD+v+F   ++++ +l+
  678434392 164 FCKILTASDTSTHGGFSVPRRAAEKVfppldfsQQP--PTQELVARDLHENVWKFKHIFRGQPKRHLLTTGWSVFVTAKKLVAGDSVIFI--WNEKNQLF 259
                99*****************************84433..3459************************************************..8899999* PP

                EEEE-S CS
         B3  94 vkvfrk 99 
                ++++r+
  678434392 260 IGIRRA 265
                ***997 PP
2Auxin_resp113.91.4e-37290373183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 aahaa+t++ F+v+YnPras+seFv+++ k++ka++ +++svGmRf+m fet++ss rr++Gtv+++sdld v+WpnS+Wrs+k
   678434392 290 AAHAAATNTRFTVFYNPRASPSEFVIPLTKYLKAVHhTRISVGMRFRMLFETDESSVRRYMGTVTAISDLDAVKWPNSHWRSVK 373
                 79*********************************9789******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.62E-46150293IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.0E-40157279IPR015300DNA-binding pseudobarrel domain
CDDcd100176.46E-22163264No hitNo description
SMARTSM010197.6E-25164266IPR003340B3 DNA binding domain
PROSITE profilePS5086312.379164266IPR003340B3 DNA binding domain
PfamPF023621.3E-22164265IPR003340B3 DNA binding domain
PfamPF065075.0E-33290373IPR010525Auxin response factor
PfamPF023095.6E-7749842IPR033389AUX/IAA domain
SuperFamilySSF542776.38E-7752832No hitNo description
PROSITE profilePS5174524.182757841IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 883 aa     Download sequence    Send to blast
MKTRCYCFVA SPAITSNPCP GSGWCEKEDG GLAGEAHQMK ESADDYSPEG GVKSCLNSEL  60
WHACAGPLVY LPSIGSHVVY FPQGHSEQVS ISTKREVDAQ IPNYPSLPPQ LICQLHNVVM  120
HADPETDEVY AQMTLQPLST EEQNRISFLA ADLGFGSKQP TNYFCKILTA SDTSTHGGFS  180
VPRRAAEKVF PPLDFSQQPP TQELVARDLH ENVWKFKHIF RGQPKRHLLT TGWSVFVTAK  240
KLVAGDSVIF IWNEKNQLFI GIRRANRPQT IMPSSVLSSD SMHLGLLAAA AHAAATNTRF  300
TVFYNPRASP SEFVIPLTKY LKAVHHTRIS VGMRFRMLFE TDESSVRRYM GTVTAISDLD  360
AVKWPNSHWR SVKVGWDESA AGEKQPRVSL WEIEALNTFP MYPSSFPLRF RRFSSSGGMK  420
MDDMGLTSSP VWLWEDAMYQ GMEMGMGLNP WVHPRVSASD LGFQSDMFQT MASAAAVQEA  480
RVVDPSKQML PSLMQLQLSQ APNGQATDFI EPQISDHFLQ SLSGVQSHHA PADVFPQQAI  540
HQRSLPFTNT PMQLRQVYHQ QPPAVQRFTD TCHKIVQPVE AAAPDSGYQA EFEAIQQSIS  600
HAKAGMVDSV SPLESVLGVY NDAASKSFAS YSCRPNKRIA VDPLLSVQQQ QHIDQNSVCL  660
PPFPPVGGDH CLADGGGNDP QNHFLFGVNI DSLPLVSSDK GFGTCSSYMS SSSPGVAAAA  720
DCSSRNLNPI ASSCIDDSSG FLFCSDNRNN AVSPSNRNFV KVYKSGSPGR SVDISKLSSY  780
QELRREVGRM FGLEQQLEDP LRSGWQLVFV DRENDLLLLG DDPYQEFVNS VWCIKILSPQ  840
EVQEMGRLGL QLIDLPKQKE RDRERVANFM FHVPNTKATA WGE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1625039945393Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional activator. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Regulates both stamen and gynoecium maturation. Promotes jasmonic acid production. Partially redundant with ARF6. Involved in fruit initiation. Acts as an inhibitor to stop further carpel development in the absence of fertilization and the generation of signals required to initiate fruit and seed development. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:16107481, ECO:0000269|PubMed:16829592}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678434392
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR167. {ECO:0000269|PubMed:17021043}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011096635.10.0auxin response factor 6 isoform X1
SwissprotQ9FGV10.0ARFH_ARATH; Auxin response factor 8
TrEMBLA0A2G9GUS90.0A0A2G9GUS9_9LAMI; Auxin response factor
STRINGXP_008439586.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA23682452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0auxin response factor 6
Publications ? help Back to Top
  1. Liu N, et al.
    Down-regulation of AUXIN RESPONSE FACTORS 6 and 8 by microRNA 167 leads to floral development defects and female sterility in tomato.
    J. Exp. Bot., 2014. 65(9): p. 2507-20
    [PMID:24723401]
  2. Minato N, et al.
    The phytoplasmal virulence factor TENGU causes plant sterility by downregulating of the jasmonic acid and auxin pathways.
    Sci Rep, 2014. 4: p. 7399
    [PMID:25492247]
  3. Ortega-Amaro MA, et al.
    Overexpression of AtGRDP2, a novel glycine-rich domain protein, accelerates plant growth and improves stress tolerance.
    Front Plant Sci, 2014. 5: p. 782
    [PMID:25653657]
  4. Wang Y, et al.
    MicroRNA167-Directed Regulation of the Auxin Response Factors GmARF8a and GmARF8b Is Required for Soybean Nodulation and Lateral Root Development.
    Plant Physiol., 2015. 168(3): p. 984-99
    [PMID:25941314]
  5. Barik S, et al.
    Coevolution Pattern and Functional Conservation or Divergence of miR167s and their targets across Diverse Plant Species.
    Sci Rep, 2015. 5: p. 14611
    [PMID:26459056]
  6. Pashkovskiy PP,Kartashov AV,Zlobin IE,Pogosyan SI,Kuznetsov VV
    Blue light alters miR167 expression and microRNA-targeted auxin response factor genes in Arabidopsis thaliana plants.
    Plant Physiol. Biochem., 2016. 104: p. 146-54
    [PMID:27031426]
  7. Mlotshwa S,Pruss GJ,MacArthur JL,Reed JW,Vance V
    Developmental Defects Mediated by the P1/HC-Pro Potyviral Silencing Suppressor Are Not Due to Misregulation of AUXIN RESPONSE FACTOR 8.
    Plant Physiol., 2016. 172(3): p. 1853-1861
    [PMID:27688620]
  8. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]
  9. Zhang GZ, et al.
    Ectopic expression of UGT84A2 delayed flowering by indole-3-butyric acid-mediated transcriptional repression of ARF6 and ARF8 genes in Arabidopsis.
    Plant Cell Rep., 2017. 36(12): p. 1995-2006
    [PMID:29027578]
  10. Zheng K, et al.
    Involvement of PACLOBUTRAZOL RESISTANCE6/KIDARI, an Atypical bHLH Transcription Factor, in Auxin Responses in Arabidopsis.
    Front Plant Sci, 2017. 8: p. 1813
    [PMID:29114256]
  11. Liu Z, et al.
    ARF2-ARF4 and ARF5 are Essential for Female and Male Gametophyte Development in Arabidopsis.
    Plant Cell Physiol., 2018. 59(1): p. 179-189
    [PMID:29145642]
  12. Ghelli R, et al.
    A Newly Identified Flower-Specific Splice Variant of AUXIN RESPONSE FACTOR8 Regulates Stamen Elongation and Endothecium Lignification in Arabidopsis.
    Plant Cell, 2018. 30(3): p. 620-637
    [PMID:29514943]