PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678435129
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family Dof
Protein Properties Length: 307aa    MW: 33520.7 Da    PI: 8.599
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678435129genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof127.34.7e-4087146362
     zf-Dof   3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                ++alkcprCdstntkfCyynnyslsqPryfCk+CrryWtkGG+lrnvPvGgg+rknk+ s
  678435129  87 QHALKCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNKRIS 146
                6789*****************************************************865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074781.0E-2877144IPR003851Zinc finger, Dof-type
PfamPF027015.3E-3488144IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.64690144IPR003851Zinc finger, Dof-type
PROSITE patternPS01361092128IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048364Biological Processroot development
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MGTQDAVCSP APGCFIALDP SPELRIILTG WDLIIFLKGV LKGSKDGFFL CFQQETLESI  60
LASSSSGTAK APSVAHQQEK KPRPADQHAL KCPRCDSTNT KFCYYNNYSL SQPRYFCKSC  120
RRYWTKGGTL RNVPVGGGCR KNKRISASNN ASSRRTAVAQ QEAANTGAPG VTYDQNDVAL  180
AIARFQKQQQ QHSSFRSYDD LGFWGNPTLN SNPTPNLRFG DSLGIVVDPQ QQDQMMLYGE  240
MGFRNQDLGI VPYEGYANAS DVKQKICKEN GDGSRVLWGF PFGGNGGADF GIGGCSTWHG  300
LVNSPLM
Cis-element ? help Back to Top
SourceLink
PlantRegMap678435129
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3763883e-37AK376388.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3122H18.
GenBankAM0843603e-37AM084360.1 Hordeum vulgare subsp. vulgare dof12 gene for dof zinc finger protein 12, exons 1-2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021609876.16e-62dof zinc finger protein DOF2.1-like
TrEMBLA0A2C9W0C21e-60A0A2C9W0C2_MANES; Uncharacterized protein
STRINGcassava4.1_026276m3e-61(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8824419
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60200.14e-39TARGET OF MONOPTEROS 6