PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678435430
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family C2H2
Protein Properties Length: 157aa    MW: 17271.6 Da    PI: 7.3453
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678435430genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.10.000142446123
               EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
               + C+ C++ Fs+   L  H++ H
  678435430 24 FMCNFCKRGFSNAQALGGHMNIH 46
               89*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.4E-42248IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.65E-62250No hitNo description
PROSITE profilePS5015711.0742451IPR007087Zinc finger, C2H2
PROSITE patternPS0002802646IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    Send to blast
MNVQQPSGKS VSWDGQSLVL SRSFMCNFCK RGFSNAQALG GHMNIHRKDR AKLIEFSEGN  60
LLSLDPTPKV IDYGEESGKE GCCADSPGDE KLITVEREAV CLEGEEAAKR VKVLGFGNGD  120
LDLELRLGPR LRQNPKLHDF MGLNSAGTEA QTRFSKR
Cis-element ? help Back to Top
SourceLink
PlantRegMap678435430
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006429146.12e-22transcriptional regulator TAC1
TrEMBLA0A2G9HHV44e-21A0A2G9HHV4_9LAMI; Uncharacterized protein
STRINGXP_006429146.18e-22(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA74631626
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53820.11e-18C2H2 family protein