PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678436146
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family WRKY
Protein Properties Length: 663aa    MW: 72383.6 Da    PI: 5.2189
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678436146genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY86.32.8e-27280336260
                --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                dDgy+WrKYGqK+v+gse+prsYY+Ct+++Cpvkkkvers+ ++++ e + +g Hnh+k
  678436146 280 DDGYCWRKYGQKQVRGSEHPRSYYKCTHENCPVKKKVERSQ-EGDIAELV-NGAHNHSK 336
                8****************************************.99**9988.69****85 PP
2WRKY45.41.6e-144815192159
                -EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY  21 prsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                 +sYY+Cts+gC+v+k+ver+++d k v++tYeg+Hnh+
  678436146 481 RKSYYKCTSPGCNVRKHVERASHDLKSVITTYEGKHNHD 519
                469***********************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081122.286274339IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.1E-23276337IPR003657WRKY domain
SuperFamilySSF1182901.7E-21277337IPR003657WRKY domain
SMARTSM007743.4E-29279336IPR003657WRKY domain
PfamPF031063.4E-20280334IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.6E-19459521IPR003657WRKY domain
SuperFamilySSF1182901.31E-17466521IPR003657WRKY domain
PROSITE profilePS5081124.455469521IPR003657WRKY domain
SMARTSM007742.1E-18474520IPR003657WRKY domain
PfamPF031065.3E-9481519IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 663 aa     Download sequence    Send to blast
MGGYEDQIAV SGDWTPSNGS PRSIFSSMRN DNVVAGSLEP AVEVKNQPLF EGRTDSGNTD  60
ENEASIKDDG EIEWNTFSES RASSRGNLVE RMAARAGKNA PRLNTSIRPP DIPDISDGQQ  120
TFLMTIPPGL SPTTFLESPV FLHNSQVMPS PTTGKFFYAA SGNSSNLAPV TDKCQTNSFQ  180
DSSSFTFKPV AESGPLSYRN PANKICSSDL RLILVHAGDS NYQEPINVED YSKSHGEKTS  240
KNGTSEICHS SSVPESSPSL EDANENADQY SGDPSESPCD DGYCWRKYGQ KQVRGSEHPR  300
SYYKCTHENC PVKKKVERSQ EGDIAELVNG AHNHSKPQPD RRDMNQYNSN SNRDFVWSSA  360
QKPNATASAL AWCQESGSSV PIPQEYSTGG GSQPQAQFEL GDGVDVSSTF SNDDEEEPVM  420
QGGASLVYDG EGDESESKRR RHETPYIPEL SVVNRAAIRE PRVVVQTMSD VDILDDGYRW  480
RKSYYKCTSP GCNVRKHVER ASHDLKSVIT TYEGKHNHDV PAARNSSHVN SGGSNNQQPP  540
PPMAVSSHLN RPELMQMLAN TSFRRPEIGP YGLSGRPQMN AGPMYGFGGS NQPLNLSALP  600
GLGKLPPLHP YSGSLPRPLN SYMLPKVEPK LEPVTTDSSG MLPSDGSSLY QQLMSQLPLG  660
PQM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-24280522878Probable WRKY transcription factor 4
2lex_A1e-24280522878Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap678436146
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011097673.10.0probable WRKY transcription factor 2 isoform X2
TrEMBLA0A2G9HU770.0A0A2G9HU77_9LAMI; Uncharacterized protein
STRINGEMJ076261e-174(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37112341
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.11e-107WRKY DNA-binding protein 2