PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678437479
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family C2H2
Protein Properties Length: 399aa    MW: 44893.2 Da    PI: 9.9886
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678437479genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.17.4e-065173123
               EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
               ++C++C++ F r  nL+ H r+H
  678437479 51 FVCEICNQGFQRDQNLQMHRRRH 73
               89********************9 PP
2zf-C2H2140.00015128150123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                ++C +C+k +  +s++k H++t+
  678437479 128 WVCYKCSKGYAVQSDYKAHLKTC 150
                58*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.2E-55073IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.7835173IPR007087Zinc finger, C2H2
SuperFamilySSF576677.42E-55173No hitNo description
SMARTSM003550.00955173IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805373IPR007087Zinc finger, C2H2
SMARTSM003557492122IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.605.5E-4115149IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM00355180128155IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MMLNANDSQL LQLPSSNNDG GKKKRLPAGT PDPEAEVVSL SPKTLLETDR FVCEICNQGF  60
QRDQNLQMHR RRHKVPWKLA KRDNATPKRR VYVCPEPSCL HHDAGHALGD LVGIKKHYRR  120
KHSNQKQWVC YKCSKGYAVQ SDYKAHLKTC GTRGHSCDCG RVFSRVESFI EHQDVCNIRL  180
RSLRPPPQTH RLLSVSGPIS TGVSATDFLT RPQPKEPVFL NPPAISRAKL NLELQLLTTE  240
NEVIKKPYNR EDSSTTLLHL SIGSPSASTV DPQSLRLKEH SEKQLKQAMA DKAHAAEARW  300
QAHRQVQLAE QELSDAKRIR QQAAAELMKA QVLKEVAASK PINPFTLHLT CDSCSRKRLQ  360
QGSSAPVQAE ASSSYESSLM PRHSIAEMKG WEMKKGFHE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-17124177356Zinc finger protein JACKDAW
5b3h_F1e-17124177356Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in inflorescence stems gravitropism, probably by regulating starch accumulation in amyloplasts of graviperceptive cells. Required for stem circumnutation movements. Regulates lateral organ morphogenesis and gravitropic responses (PubMed:24039602). Acts cooperatively with IDD16 to control silique and branche orientation (PubMed:24039602). Involved in the establishment of auxin gradients through the regulation of auxin biosynthesis and transport (PubMed:24039602). {ECO:0000269|PubMed:16813575, ECO:0000269|PubMed:18259878, ECO:0000269|PubMed:24039602, ECO:0000269|PubMed:9210330}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678437479
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not regulated by auxin. {ECO:0000269|PubMed:24039602}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011073161.11e-142protein SHOOT GRAVITROPISM 5-like
SwissprotF4IPE31e-123IDD15_ARATH; Zinc finger protein SHOOT GRAVITROPISM 5
TrEMBLA0A1U7ZBB21e-138A0A1U7ZBB2_NELNU; protein indeterminate-domain 16-like
STRINGXP_010244535.11e-139(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10222482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01940.11e-126C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Kim JY,Ryu JY,Baek K,Park CM
    High temperature attenuates the gravitropism of inflorescence stems by inducing SHOOT GRAVITROPISM 5 alternative splicing in Arabidopsis.
    New Phytol., 2016. 209(1): p. 265-79
    [PMID:26256266]
  3. Ryu JY,Kim JY,Park CM
    Adaptive thermal control of stem gravitropism through alternative RNA splicing in Arabidopsis.
    Plant Signal Behav, 2015. 10(11): p. e1093715
    [PMID:26452406]
  4. Qu Y, et al.
    Peroxisomal CuAOζ and its product H2O2 regulate the distribution of auxin and IBA-dependent lateral root development in Arabidopsis.
    J. Exp. Bot., 2017. 68(17): p. 4851-4867
    [PMID:28992128]
  5. Shi H, et al.
    Zinc finger of Arabidopsis thaliana 6 is involved in melatonin-mediated auxin signaling through interacting INDETERMINATE DOMAIN15 and INDOLE-3-ACETIC ACID 17.
    J. Pineal Res., 2018. 65(2): p. e12494
    [PMID:29607541]