PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678437822
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family DBB
Protein Properties Length: 201aa    MW: 22597.6 Da    PI: 5.2753
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678437822genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box21.54.8e-071646434
   zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeH 34
               r C+++++ ++ l+C+ ++  lC +C  e H
  678437822 16 RLCDLCNSSKAFLYCRADSARLCFNCDREAH 46
               68******99*******************99 PP
2zf-B_box24.94.2e-0859101442
   zf-B_box   4 rkCpeHeekelqlfCedCqqllCedClleeHkg....Htvvpl 42 
                  C+ +++ + ++fC + ++ lC++C  e H +    H+++p+
  678437822  59 LLCDGCDSAPCSIFCSTESTVLCQNCDWELHGNfvtvHDRRPI 101
                57*****************************669999999886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003362.0E-101360IPR000315B-box-type zinc finger
PfamPF006433.6E-51646IPR000315B-box-type zinc finger
CDDcd000213.47E-51660No hitNo description
PROSITE profilePS5011910.0111760IPR000315B-box-type zinc finger
PROSITE profilePS5011910.39556101IPR000315B-box-type zinc finger
CDDcd000217.09E-660101No hitNo description
SMARTSM003360.4661101IPR000315B-box-type zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MSFLPANGAR PWPCPRLCDL CNSSKAFLYC RADSARLCFN CDREAHFSNP LFQKHARSLL  60
CDGCDSAPCS IFCSTESTVL CQNCDWELHG NFVTVHDRRP IEGFSGCPSF TELLSFLGLE  120
DLTKKSDDEE DGWMDLLVWE TASVVNLDNA IVTKDSADSP HSFQAMDVPP LPKNRNAICG  180
KHKEDILRQL REMATNEHKL H
Cis-element ? help Back to Top
SourceLink
PlantRegMap678437822
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011079734.19e-91zinc finger protein CONSTANS-LIKE 13
SwissprotO822562e-64COL13_ARATH; Zinc finger protein CONSTANS-LIKE 13
TrEMBLS8DS635e-87S8DS63_9LAMI; Uncharacterized protein (Fragment)
STRINGMigut.D00173.1.p1e-84(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA73622228
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47890.22e-67B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]