PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678438078
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family C2H2
Protein Properties Length: 278aa    MW: 30552.9 Da    PI: 7.187
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678438078genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.50.00022107129123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                ++C+ C+k+Fs++  L  H  +H
  678438078 107 FQCKTCKKVFSSHQALGGHRASH 129
                89**************9999888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS0002801841IPR007087Zinc finger, C2H2
PfamPF139128.0E-10107131IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.201107134IPR007087Zinc finger, C2H2
SuperFamilySSF576675.14E-6107129No hitNo description
SMARTSM003550.056107129IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280109129IPR007087Zinc finger, C2H2
SuperFamilySSF576675.14E-6164191No hitNo description
PfamPF139126.9E-13168192IPR007087Zinc finger, C2H2
PROSITE profilePS501579.058169191IPR007087Zinc finger, C2H2
SMARTSM003551.2169191IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280171191IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MDRLADPDED EEHRTRHCRG LPCAGALGGH MRPHDHAVAS HTGNRHPYFL RAKGTPRYHE  60
LGASCDFDVS NEDQDLANCL VMLSDRCYTQ EGVEKKAVKE GGGGGNFQCK TCKKVFSSHQ  120
ALGGHRASHK KVKGCYAAKS SSYETNAGGN EDNEELIMQE DHRKRAKTHE CSVCLRVFSS  180
GQALGGHKRC HWLTTSMESS TPFIPNHHHL DLNLNLPAPP RIQPQGDASS LSCATTSHID  240
QLPADHKPEN THKLSDLRKD ANLDGAWLQM GFPSTSDG
Cis-element ? help Back to Top
SourceLink
PlantRegMap678438078
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011081399.13e-58zinc finger protein ZAT1
TrEMBLA0A2G9H2I45e-57A0A2G9H2I4_9LAMI; Uncharacterized protein
STRINGMigut.A00958.1.p1e-41(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19102243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35280.13e-29C2H2-like zinc finger protein