PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678438585
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family HD-ZIP
Protein Properties Length: 186aa    MW: 20920.8 Da    PI: 8.7986
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678438585genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox52.96.2e-171669457
               -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
   Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
               + ++++eq+++Le+ F   +++  e++ +LA++l ++ rq+ +W+qN+Ra++k+
  678438585 16 KKRLSQEQVRVLESSFDAAKKLEPERKLQLARQLAVPPRQIAIWYQNKRARWKN 69
               5679************************************************95 PP
2HD-ZIP_I/II108.74.2e-3515105292
  HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                  +k+rls+eqv++LE+sF++ +kLeperK +lar+L + prq+a+W+qn+RAR+k++ lE dyeaL+ +++a  +++++Lekeve+Lr+el+
    678438585  15 HKKRLSQEQVRVLESSFDAAKKLEPERKLQLARQLAVPPRQIAIWYQNKRARWKNQSLELDYEALQLRLEAALADKKQLEKEVESLRAELR 105
                  69*************************************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.8231070IPR001356Homeobox domain
SuperFamilySSF466894.71E-171178IPR009057Homeodomain-like
SMARTSM003892.8E-131274IPR001356Homeobox domain
CDDcd000868.12E-131371No hitNo description
PfamPF000462.3E-141669IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.608.4E-181777IPR009057Homeodomain-like
PROSITE patternPS0002704568IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MSLQQSQKAS SSKVHKKRLS QEQVRVLESS FDAAKKLEPE RKLQLARQLA VPPRQIAIWY  60
QNKRARWKNQ SLELDYEALQ LRLEAALADK KQLEKEVESL RAELRCTQEV VFGLRGQLYA  120
PAGGFVPPPS AGWDEGTVTS CLTDDVGYAR NLRIEELYAC FMLGGSNQGH ISGGVSDRDF  180
ALGYQH
Cis-element ? help Back to Top
SourceLink
PlantRegMap678438585
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011082709.12e-61homeobox-leucine zipper protein ATHB-52
TrEMBLA0A2G9HDX02e-62A0A2G9HDX0_9LAMI; Uncharacterized protein
STRINGMigut.M00776.1.p8e-55(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27152453
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53980.14e-27homeobox protein 52