PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678439025

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

TALE

Protein Properties

Length: 598aa MW: 65314.8 Da PI: 5.5034

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678439025	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	29.5	1.3e-09	398	435	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe n+yp+ +++ LA+++gLt +qV++WF N R + 678439025 398 FEHflNPYPKDSDKIMLARQTGLTRCQVSNWFINARVR 435 665569******************************88 PP
2	BELL	109	2.8e-35	260	331	1	72
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 e+qel+++ ++Ll ll+ Vd+rY+qy +q+q+++ssF+ ag g+akpYtslAl++iSrhFr+L+dai qi 678439025 260 EKQELHSRLTQLLVLLDDVDRRYRQYSHQMQMIVSSFDSTAGSGAAKPYTSLALQTISRHFRSLRDAINRQI 331 689******************************************************************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	2.1E-47	181	329	IPR006563	POX domain
Pfam	PF07526	1.8E-44	187	327	IPR006563	POX domain
PROSITE profile	PS50071	12.179	376	439	IPR001356	Homeobox domain
CDD	cd00086	8.44E-13	379	440	No hit	No description
SMART	SM00389	1.4E-9	379	443	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.5E-17	380	446	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	7.5E-28	382	445	IPR009057	Homeodomain-like
Pfam	PF05920	6.9E-18	396	435	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 598 aa Download sequence Send to blast
MDAFFPMPSN QTEAETLVYL RESLPNSQSE TPLRPSDVVA YMNCPSTSGP YAGGLPENSQ 60 SQASCINLHS DSNICHQEFL LNFEGSGAEQ SHLSTWGAAS GVLQGLSLTL GPHTPPVMQF 120 PGVRYRKDNP NVASVLGLGA LVRDEDGGKS TPIEAEDDVQ NKQFSSVANT GSDVVPIYEM 180 MNIASAVSSS KYLKAAQQLL DEVVNVKRDI KDRNYKKELR TTAKEGDGEP ETASSDPSAM 240 ASSFSPKAGG SSTIQLSGSE KQELHSRLTQ LLVLLDDVDR RYRQYSHQMQ MIVSSFDSTA 300 GSGAAKPYTS LALQTISRHF RSLRDAINRQ IHVARRSLGE EDASSTEKVI GISRLRYVDR 360 NMRQQRVLQQ LGLMHQQAWR PQRGLPETSV SILRAWLFEH FLNPYPKDSD KIMLARQTGL 420 TRCQVSNWFI NARVRLWKPM IEEMYKEELG DVDIDSNSSS EASQTPGKSA TNSTADKFEN 480 PSNHTTSTSL QPESTVASIG TSTNPLPESN SGDNGGLTSL VEFQIPKRCR NINEISLTLG 540 LQQGELRPTS ILDGTGHGFL HLRDNNVVNP AASGMAAEAA EFDSMDSGNL ASPLPSIT

Sequence ? help Back to Top

Protein Sequence Length: 598 aa Download sequence Send to blast

MDAFFPMPSN QTEAETLVYL RESLPNSQSE TPLRPSDVVA YMNCPSTSGP YAGGLPENSQ  60
SQASCINLHS DSNICHQEFL LNFEGSGAEQ SHLSTWGAAS GVLQGLSLTL GPHTPPVMQF  120
PGVRYRKDNP NVASVLGLGA LVRDEDGGKS TPIEAEDDVQ NKQFSSVANT GSDVVPIYEM  180
MNIASAVSSS KYLKAAQQLL DEVVNVKRDI KDRNYKKELR TTAKEGDGEP ETASSDPSAM  240
ASSFSPKAGG SSTIQLSGSE KQELHSRLTQ LLVLLDDVDR RYRQYSHQMQ MIVSSFDSTA  300
GSGAAKPYTS LALQTISRHF RSLRDAINRQ IHVARRSLGE EDASSTEKVI GISRLRYVDR  360
NMRQQRVLQQ LGLMHQQAWR PQRGLPETSV SILRAWLFEH FLNPYPKDSD KIMLARQTGL  420
TRCQVSNWFI NARVRLWKPM IEEMYKEELG DVDIDSNSSS EASQTPGKSA TNSTADKFEN  480
PSNHTTSTSL QPESTVASIG TSTNPLPESN SGDNGGLTSL VEFQIPKRCR NINEISLTLG  540
LQQGELRPTS ILDGTGHGFL HLRDNNVVNP AASGMAAEAA EFDSMDSGNL ASPLPSIT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3k2a_A	6e-16	385	443	5	63	Homeobox protein Meis2
3k2a_B	6e-16	385	443	5	63	Homeobox protein Meis2
4xrs_A	6e-16	385	442	1	58	Homeobox protein Meis1
4xrs_B	6e-16	385	442	1	58	Homeobox protein Meis1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678439025

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011088451.1	0.0	BEL1-like homeodomain protein 7
Swissprot	O65685	1e-107	BLH6_ARATH; BEL1-like homeodomain protein 6
TrEMBL	A0A4D9C6L4	0.0	A0A4D9C6L4_SALSN; Uncharacterized protein
STRING	XP_009619240.1	1e-163	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA10205	22	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16400.1	2e-97	BEL1-like homeodomain 7

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Cassan-Wang H, et al. Identification of novel transcription factors regulating secondary cell wall formation in Arabidopsis. Front Plant Sci, 2013. 4: p. 189 [PMID:23781226]