PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678439972
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family WOX
Protein Properties Length: 240aa    MW: 26978.3 Da    PI: 8.8527
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678439972genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox566.8e-183897357
               --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
   Homeobox  3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                R+++t+eql+ Le+l++    +psa++++++  kl    +++ ++V++WFqN++a+ek+
  678439972 38 ARWSPTPEQLQFLEDLYRHgITTPSADQIRHIVGKLrrfgRIEGKNVFYWFQNHKAREKQ 97
               6*****************98**************************************97 PP
2Wus_type_Homeobox106.51.7e-343799365
  Wus_type_Homeobox  3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                        +RW+PtpeQ++ Le+ly++G+ tP++++i++i  +L+++G+ie+kNVfyWFQN+kaRe+q++
          678439972 37 AARWSPTPEQLQFLEDLYRHGITTPSADQIRHIVGKLRRFGRIEGKNVFYWFQNHKAREKQRK 99
                       58***********************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003895.7E-435102IPR001356Homeobox domain
PfamPF000461.6E-153897IPR001356Homeobox domain
SuperFamilySSF466891.24E-1138102IPR009057Homeodomain-like
CDDcd000869.31E-53999No hitNo description
PROSITE profilePS500719.753998IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.3E-73997IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MGGGHKEAAS TALHDACGWD HRRSSTAAAR GSGGLVAARW SPTPEQLQFL EDLYRHGITT  60
PSADQIRHIV GKLRRFGRIE GKNVFYWFQN HKAREKQRKR RRLEFLLHHQ GSHQFPTASF  120
AQSLGTLPFK YPVPASMDDL IKTAESSAPS WPLDLESSSF MFTKSFSAQK VFGCENGNSF  180
EFESCSDNSG EVKDTQTLDL FPTKKLVLIP ADGKEEGESL LRTARLQPSQ FFEFLPTREI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
197101RKRRR
298102KRRRL
Cis-element ? help Back to Top
SourceLink
PlantRegMap678439972
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA46812342
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18010.16e-31WUSCHEL related homeobox 1