PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678440016
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family CO-like
Protein Properties Length: 337aa    MW: 37897.4 Da    PI: 6.6279
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678440016genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box33.87.1e-111659340
   zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
               +r C+++ +k+++++C  ++ +lC++C ++ H+       H++v
  678440016 16 ARACDNCLKKRARYYCDADDAFLCQSCDSSVHSAnplarrHQRV 59
               678*****************************668888889887 PP
2CCT66.28.9e-23281324144
        CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                Rea+++RY+eKr++R+F KkirYe+RK +Ae+RpR+KGrFvk++
  678440016 281 REARVSRYREKRRSRLFAKKIRYEVRKLNAEKRPRIKGRFVKRT 324
                9*****************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003367.9E-151461IPR000315B-box-type zinc finger
PROSITE profilePS5011911.5761461IPR000315B-box-type zinc finger
PfamPF006436.5E-91660IPR000315B-box-type zinc finger
CDDcd000212.46E-111761No hitNo description
PROSITE profilePS5101716.073281323IPR010402CCT domain
PfamPF062039.4E-18281323IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MASTGKFADI VRGKSARACD NCLKKRARYY CDADDAFLCQ SCDSSVHSAN PLARRHQRVR  60
IGKDAGVVEP TPSWHQGFKR KARSPRGKKN GKQPRVDDLV DRNPVGLVPE ICSQELNEDQ  120
ILFSVPMLDH DDVAVNFHDF VPSENDILEF AEDVDRLLGE GFDDPCFGIG ELGIFDFDEK  180
RAQDENKLEA LDGAANEDYQ IQLETAAFSP TKDTHETKTF LNLDIEGVLS AWNCNKSPFL  240
TSETGKIKSV DFWTDFFGAD EGTREIGGVV PVHGAATDGG REARVSRYRE KRRSRLFAKK  300
IRYEVRKLNA EKRPRIKGRF VKRTNFESPG NFSVVTD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1291307RRSRLFAKKIRYEVRKL
Cis-element ? help Back to Top
SourceLink
PlantRegMap678440016
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020547025.11e-93zinc finger protein CONSTANS-LIKE 16-like
TrEMBLS8EME71e-100S8EME7_9LAMI; Uncharacterized protein
STRINGPGSC0003DMT4000377556e-87(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA15392470
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25440.13e-57B-box type zinc finger protein with CCT domain