PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678440408
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family C3H
Protein Properties Length: 251aa    MW: 26622.5 Da    PI: 8.1049
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678440408genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.11.1e-0675871527
               -TTTTT-SS-SSS CS
    zf-CCCH 15 CkyGdrCkFaHgp 27
               Ck+Gd+C+FaHg+
  678440408 75 CKFGDKCHFAHGE 87
               ***********96 PP
2zf-CCCH30.56.2e-10217241126
                --S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                +kt+lC +fa+ G C + +rC+FaHg
  678440408 217 FKTKLCENFAK-GSCTFAERCHFAHG 241
                69*********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM00356176287IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.02E-57191IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-87392IPR000571Zinc finger, CCCH-type
PROSITE profilePS501038.7287588IPR000571Zinc finger, CCCH-type
SuperFamilySSF547913.51E-16117193IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.105.6E-17120191IPR004088K Homology domain, type 1
SMARTSM003223.2E-13122192IPR004087K Homology domain
PROSITE profilePS5008414.361123187IPR004088K Homology domain, type 1
PfamPF000131.4E-11125189IPR004088K Homology domain, type 1
CDDcd001052.68E-15125188No hitNo description
Gene3DG3DSA:4.10.1000.101.4E-15214247IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.32E-8215246IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.422216243IPR000571Zinc finger, CCCH-type
SMARTSM003563.9E-6216242IPR000571Zinc finger, CCCH-type
PfamPF006429.9E-7217241IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MEFGVEKKRT RDDSELNGDG GVKRPKPVFL AALLGRDATS CIMCLVVSKQ LLNCLAVTLP  60
FKCLIEILFG TPEGCKFGDK CHFAHGEEEL GKPSIPVHED ARGFLGRFAA RDPNKGAAGF  120
GASATATISI DASLAGAVIG KGGVNSKQIC RLTGVRLSVR DHGTDPNSRN IELEGSFDQI  180
KEASQMVQEL IMSVSSTPSM GLGGLKNPSA GVGSSNFKTK LCENFAKGSC TFAERCHFAH  240
GAEELRRLGG F
Cis-element ? help Back to Top
SourceLink
PlantRegMap678440408
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011083138.12e-81zinc finger CCCH domain-containing protein 44-like
SwissprotQ7XPK13e-63C3H31_ORYSJ; Zinc finger CCCH domain-containing protein 31
TrEMBLA0A068VA912e-77A0A068VA91_COFCA; Uncharacterized protein
STRINGXP_009803026.12e-77(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8452498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.12e-44C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]